BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486799
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62940.2 | Symbols: | Cysteine proteinases superfamily prot... 1674 0.0
> AT3G62940.2 | Symbols: | Cysteine proteinases superfamily protein
| chr3:23262950-23264709 REVERSE LENGTH=1235
Length=1235
Score = 1674 bits (906), Expect = 0.0
Identities = 1133/1238 (92%), Gaps = 33/1238 (3%)
Strand=Plus/Plus
Query 1 TTTTGTCGCCTGAAGCGTAAACCCTAAATAAATCACTAATCTTGGATTCTTCTCCTTTGG 60
|||||||| |||||||||||||| ||||||||||||| | ||||||||||| ||||
Sbjct 9 TTTTGTCGAGTGAAGCGTAAACCC----TAAATCACTAATCATCGATTCTTCTCCGTTGG 64
Query 61 ATCAAAG-GT-A-TGAA---C-GATAATCGAATGGCATCTGGAGATAGTGTATCCCAAGA 113
||||||| | | | || | || ||| || |||||| || || ||||||| ||||
Sbjct 65 ATCAAAGCTTCATTTAATGGCAGACAAT--AA-AACATCTGAAGGTATTGTATCCGAAGA 121
Query 114 AACCCCCATTGATGCTTCTCAGGAG---CAACATGAAACAGTTGATGAGATGCTTGCCCG 170
||| ||||| ||||||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 122 AACTCCCATGGATGCTTCTCAGGAGCAACAACATGAAACAGTTGAGGAGATGCTTGCTCG 181
Query 171 CCACAGGCAAGAGATTAAACAACTTCAGAACCAAGAGACAGAGATgaagaaggcagccgc 230
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 182 CCACAGGCAAGAGATTAAACAACTTCAAAACAAAGAGACAGAGATGAAGAAGGCAGCTGC 241
Query 231 aaaaggtagcaaagctgaacaaaaagcaaagaagaagcaagtcgaagaagACGTTTCCAA 290
|||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||||
Sbjct 242 CAAAGGTAGCAAAGCTGAACAAAAAGCTAAGAAGAAGCAAGTCGAAGATGACATTTCCAA 301
Query 291 ACTTTCCTCAAAACTCAAGGAGAAACAGTTGAAAGAACTCGCCTCTCAAGGTTTTAGCAG 350
||| ||| | || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 302 ACTCTCCACTAAGCTCAAGGACAAACAGTTGAAAGAACTCGCCTCTCAAGGTTTCAGCAG 361
Query 351 CAGCAGCAGC-AC--CGTTGCCAAGGACGAAGCGAATGAGAAAAAAGGAGACATCGACAC 407
|||||||||| || | |||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 362 CAGCAGCAGCAACAACATTGCCAAGGACGAAACGACTGAGAAAAAAGGAGACATCGACAC 421
Query 408 GT-TAGTCAGAGCGATAGCTGGAGTCTCAGTCACTGCTCAACAGGAGCACTCAAAGCCCA 466
| |||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 422 -TCTAGTTAGAGCTATAGCTGGAGTCTCAGTCACTGCTCAGCAAGAGCACTCAAAGCCTA 480
Query 467 GCAAGAGCGTGAAGAGGCGCGAGAAACGGGCTAAGGAAGAAGCAGATAGAGAGCAGAGAA 526
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 GCAAGAGCGTGAAGAGGCGCGAGAAACGGGCTAAGGAAGAAGCAGACAGAGAGCAGAGAA 540
Query 527 TCAAAGAGGAGCAAAGCCAAGTGACAAGTGATCGTGTGGTCGAGAACGCAAAGCTCGAGA 586
| ||||||||||||||||| |||| |||||||||| |||| |||||||| ||||| ||||
Sbjct 541 TTAAAGAGGAGCAAAGCCACGTGAAAAGTGATCGTATGGTTGAGAACGCCAAGCTTGAGA 600
Query 587 AGAAGCTTAAACCATTGGGATTAACAATCAATGAGATAAAACCAGACGGACATTGCCTTT 646
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 601 AGAAGCTTAAACCATTGGGATTAACAGTCAGTGAGATTAAACCAGACGGACATTGCCTTT 660
Query 647 ACCGGGCTGTTGAGAATCAGCTTGCCAATCGCTCAGGCGGTGCATCTCCTTACACATACC 706
|||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 661 ACCGTGCTGTTGAGAATCAGCTTGCCAACCGCTCGGGCGGTGCATCTCCTTACACATACC 720
Query 707 AGAACCTAAGAGAAATGGCTGCTTCGTACATGAGAGAGCACAAGACCGATTTTCTCCCGT 766
|||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 721 AGAATCTAAGAGAAATGGCTGCTTCGTACATGAGAGAGCACAAAACCGACTTTCTCCCGT 780
Query 767 TTTTCTTGTCAGAGACTGAGGGCGACTCCAACAGTGGATCTGCAGAAGAGCGGTTTGAGA 826
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 781 TTTTCTTGTCAGAGACTGAGGGTGACTCCAACAGTGGATCTGCAGAAGAGCGGTTTGAGA 840
Query 827 AATACTGCAGAGAAGTCGAGTCAACCGCCGCTTGGGGCAGTCAATTGGAGCTTGGAGCAT 886
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 841 AATACTGCAGAGAAGTCGAGTCAACCGCTGCTTGGGGCAGTCAATTGGAGCTTGGAGCAT 900
Query 887 TAACACATTGCTTGAGGAAACACATAAAGGTGTATTCTGGG-TCGTTTCCAGATGTTGAA 945
||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||
Sbjct 901 TAACACATTGCTTGAGGAAACACATAAAGGTGTATTC-GGGATCGTTTCCGGATGTTGAG 959
Query 946 ATGGGCAGAGAGTATAAATCCGGCGATGACTCGAGTCTCTTGTTATCGTATCACAGGCAT 1005
||||||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 960 ATGGGCAAAGAGTATAGATCCGGCGATGACTCGAGCCTCATGTTATCGTATCACAGGCAT 1019
Query 1006 GCTTTTGGGCTCGGGGAGCATTATAACTCCGTGGTGCTCGCCCACAACATCACCGGATGA 1065
||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 1020 GCTTTTGGGCTCGGGGAGCATTATAACTCAGTGGTGCTCGTCAACAACATCACCGGATGA 1079
Query 1066 TG-A--A----CTTTATCTCAAGCTTTAAGAAAAGTACTTTTGTATCAAAAGTTTACTGA 1118
|| | | |||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1080 TGGATGATGGACTTTATCTAAAGCTTTAAGAAAAGTGCTTTTGTATCAAAAGTTTACTGA 1139
Query 1119 AAATCTTTCTTCTTTAATGTTTGTTGGATTTGAGAGAGAACCAATCTGTAACTTCAATTT 1178
|| |||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||
Sbjct 1140 AATTCTTTCTTCTTTAATGTTTGTTGGATTTGAGAGA-A-CCAATGTGTAACTTCAATTT 1197
Query 1179 TTCATTTGGTTACAAGGCGAAGCATAATCTATTTCTAC 1216
||||||||||||||||||||||||||||||||| ||||
Sbjct 1198 TTCATTTGGTTACAAGGCGAAGCATAATCTATTGCTAC 1235
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5