BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486802
Length=593
Score E
Sequences producing significant alignments: (Bits) Value
AT3G62960.1 | Symbols: | Thioredoxin superfamily protein | chr... 850 0.0
> AT3G62960.1 | Symbols: | Thioredoxin superfamily protein | chr3:23268710-23269324
FORWARD LENGTH=615
Length=615
Score = 850 bits (460), Expect = 0.0
Identities = 566/613 (92%), Gaps = 24/613 (4%)
Strand=Plus/Plus
Query 1 AAAGCTACATATTCTTTAAGATACATAATTTCTCGATTGTCCTGAGCCCTCAGATCAAAA 60
|||||||||||| || |||||| |||||||||||||||||||||||||||||| |||||
Sbjct 4 AAAGCTACATATACTAAAAGATATATAATTTCTCGATTGTCCTGAGCCCTCAGACCAAAA 63
Query 61 TCTGACCATGGACAAGGTGATGAGAATGTCATCGGAGAAAGGAGTCGTGATCTTCACGAA 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 64 TCTGACCATGGACAAGGTTATGAGAATGTCATCGGAGAAAGGAGTCGTGATCTTCACCAA 123
Query 121 AAGCTCATGCTGTCTCTGCTACGCCGTGCAAATCCTTTTCCGTGACCTTAGGGTTCAACC 180
||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 124 AAGTTCATGTTGTCTCTGCTACGCCGTGCAAATCCTTTTCCGTGATCTTAGGGTTCAACC 183
Query 181 AACAATCCACGAGATCGACAACGATCCTGACTGCCGAGAGATTGAGAAGGCCTTAGTTCG 240
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 184 AACAATCCACGAGATCGACAACGATCCTGACTGCCGTGAGATCGAGAAGGCCTTAGTTCG 243
Query 241 TCTTGGCTGCGCCAACGCGGTTCCTGCGGTCTTTGTAAGTGGCAAGCTCGTGGGTTCGAC 300
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 244 TCTTGGCTGCGCCAACGCGGTTCCTGCTGTCTTTGTAAGTGGCAAGCTCGTGGGTTCGAC 303
Query 301 CAACGATGTCATGTCGCTTCACCTAAGTGGCTCTCTCGTTCCCTTGATCAAGCCGTATCA 360
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 304 CAACGATGTCATGTCGCTTCACCTAAGTGGCTCCCTCGTTCCCTTGATCAAGCCGTATCA 363
Query 361 GTCATTTCATAACTAGAAAAACAAT--CGATGCATAAGAAAGATAATTAGTATATG-T-T 416
||||||||||||||||||||||||| |||||| ||||||||||||||||||||| | |
Sbjct 364 GTCATTTCATAACTAGAAAAACAATATCGATGCTTAAGAAAGATAATTAGTATATACTAT 423
Query 417 -AATTGGATAGTGAGAATAATGATGGAA--AGATATCACGTAAATGTGTATCAGGTTCTT 473
||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 424 TAATTGGACAGTGAGAATAATGATGGAATTAGATAACACGTAAATGTGTATCAGGTTCTT 483
Query 474 ATTTATATC--G-----A------GTTTAGCTTATGTCTAAGAAATTAATTAGCTAGCTT 520
||||||| | | | ||||||||||||||||||||||| || |||||||||
Sbjct 484 ATTTATAGCTAGTGCTTATATCTTGTTTAGCTTATGTCTAAGAAATTGATGAGCTAGCTT 543
Query 521 TGTATTTCCAGCTTAACTAATCGGTGGATGTACTGATCTATGTGTGTTATCTATTTAATG 580
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 544 TGTATTTCCAGCTTAACTAATCGGTGGATGTACTGAT----GTGTACTATCTATTTAATG 599
Query 581 GAAAAATTATTGA 593
|||||||||||||
Sbjct 600 GAAAAATTATTGA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28532995496
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5