BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486804
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63000.1 | Symbols: NPL41 | NPL4-like protein 1 | chr3:23283... 2132 0.0
AT2G47970.1 | Symbols: | Nuclear pore localisation protein NPL... 1044 0.0
> AT3G63000.1 | Symbols: NPL41 | NPL4-like protein 1 | chr3:23283609-23285540
FORWARD LENGTH=1652
Length=1652
Score = 2132 bits (1154), Expect = 0.0
Identities = 1272/1330 (96%), Gaps = 3/1330 (0%)
Strand=Plus/Plus
Query 52 TTTTGAACGAA-GAAGATGACGATGCTGAGAATCCGAAGCAGAGATGGATTGGAGAGAGT 110
||||||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 212 TTTTGAACGAACGAGGATGACGATGCTCAGAGTCCGAAGCAGAGATGGATTGGAGAGAGT 271
Query 111 GAGCGTAGATGGACCTCATATTACAGTCTCCCAACTCAAAACCCTAATCCAAGGTCAGCT 170
||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 272 GAGTGTAGATGGACCTCATATCACAGTCTCCCAACTCAAAACCCTAATCCAAGATCAGCT 331
Query 171 TCAGATCCCTATCCATAACCAAACCTTATCCACCAATCGAAACCTTCTCCTCGCCAAAAC 230
||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |
Sbjct 332 TCAGATCCCTATCCACAACCAAACCTTATCCACCAATAGAAACCTTCTCCTCGCTAAGAG 391
Query 231 CCCTGCTGATTTCCTAGGGTTCACCGACATGGCCGATCCAAACCTCCGAATCTCGTCTCT 290
|||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 392 CCCTTCTGATTTCCTAGCGTTCACCGACATGGCCGATCCTAACCTCCGAATCTCGTCTCT 451
Query 291 CAATCTCGCCCACGGCTCTATGCTCTACCTTGCTTACGAAGGTGAGCGCACGATTCGCGG 350
|||||| || |||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 452 CAATCTAGCTCACGGCTCTATGGTCTACCTTGCTTACGAAGGTGAGCGTACGATTCGTGG 511
Query 351 TGGCCCTGCCGTTACACCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATCTAAT 410
||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 TGGTCCTGCTGTAACGCCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATCTAAT 571
Query 411 CGCACGGCAGATGCGCGTCGGTCGCCAGGAGAAGTCTCACTGCGATTCCGTCTCGTTCGA 470
||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 572 CGCTCGACAGATGCGCGTCGGTCGCCAGGAGAAGGCTCACTGCGATTCCGTCTCGTTCGA 631
Query 471 TCGCGATTGCGCCAACGCGTTTCAGCATTACGTCAACGAGTCGCTTGCCTTCGCTGTCAA 530
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 632 TCGCGATTGCGCCAATGCGTTTCAGCATTTCGTCAACGAGTCGCTTGCCTTCGCTGTCAA 691
Query 531 ACGCGGTGGATTCATGTACGGTAACGTCTCTGAGCAAGGTCAGGTTGAGGTGAATTTCAT 590
||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 692 ACGCGGTGGATTCATGTACGGGAACGTCTCTGAGGATGGTCAGGTTGAGGTGAATTTCAT 751
Query 591 CTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACTCTGAGGA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 CTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACTCTGAGGA 811
Query 651 AGAGAAACGTGTTGATGCTATTGCTTTAGGGTTAGGGATGAGGAGAGTTGGGTTTATATT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 AGAGAAACGTGTTGATGCTATTGCTTTAGGGTTAGGGATGAGGAGAGTTGGGTTTATATT 871
Query 711 CAACCAGACTGTGACTCAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAACCAGACTGTGACTCAGGACAAGAAGGAGTACACTTTGTCTAACGTTGAGGTGTTGCT 931
Query 771 TGCGGCGCAGCTTCACGCCGAGAGCGAATTGAAGGAGTGGGTCACTGCGGTTGTGAAGCT 830
|||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 932 TGCGGCTCAGCTTCACGCTGAGAGCGAATTGAAGGAGTGGGTCACTGCTGTTGTGAAGCT 991
Query 831 TGAGATCAACGAGGATGGTGCTGCTGATGTTCACTTCGAGGCGTTTCAGATGAGTGATAT 890
||||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||
Sbjct 992 TGAGATCAATGAGGATGGTGGTGCTGATGTTCACTTTGAGCCGTTTCAGATGAGTGATAT 1051
Query 891 GTGCGTTAGGTTGTTTAAGGAAGGATGGTTCGAGACTGAGATTGGATCC-GAGGATGATC 949
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1052 GTGCGTTAGGTTGTTTAAGGAAGGATGGTTCGAGACTGAGATTGGA-CCTGAGGATGATC 1110
Query 950 CCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGACGTTAAAGAAGTCG 1009
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1111 CCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGATGTTAAAGAAGTCG 1170
Query 1010 ACAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGTACCTTTGTCGTGCA 1069
| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 1171 ATAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGGACCGTTGTCGTGTA 1230
Query 1070 CCTTCCCGATAGAGAACCGGAACATTCAAACAACAATGCGGGCTTTGAAAACGCATATGG 1129
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 1231 CCTTCCCGATAGAGAACAGGAACACTCAAACAACAATGCGGGCTTTGAAAACGCATATGG 1290
Query 1130 AGCGAGCAAGGAGCCTCCCATTTGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTG 1189
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1291 AGCGAGCAAGGAGCCTCCCATTCGTGAAGAGGATCTCTGATTTTCATCTGCTTCTCTTTG 1350
Query 1190 TGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAGTGCGTCCGTCTTC 1249
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1351 TGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGAATGCGTCCGTCTAC 1410
Query 1250 AGTCTCATGTCCCTGAGGGTTATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAA 1309
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1411 AGTCTCATGTCCCTGAGGGATATGAGTTGCTCATCGACTCCATGGCCAATACTTCTTAAG 1470
Query 1310 TTTTACAAGTCTGTGTGTTCATATTCTCTCCTTCAGATTTGTGTACTTCTTTTACTTCTT 1369
||||||||||||||||||||||||||||||||| |||||||||||| || |||||||||
Sbjct 1471 TTTTACAAGTCTGTGTGTTCATATTCTCTCCTTTAGATTTGTGTACAGCTGTTACTTCTT 1530
Query 1370 CCCTTAAATT 1379
|| |||||||
Sbjct 1531 CCTTTAAATT 1540
> AT2G47970.1 | Symbols: | Nuclear pore localisation protein NPL4
| chr2:19629474-19631182 FORWARD LENGTH=1502
Length=1502
Score = 1044 bits (565), Expect = 0.0
Identities = 1047/1278 (82%), Gaps = 40/1278 (3%)
Strand=Plus/Plus
Query 56 GAACGAAGAAGATGACGATGCTGAGAATCCGAAGCAGAGATGGATTGGAGAGAGT--GAG 113
||| ||||| ||||| |||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 41 GAAGGAAGACGATGATGATGCTCAGAATCCGAAGCAGAGATGGACTGGAGAGAGTCACAG 100
Query 114 CGTAGATGGACCTCATATTACAGTCTCCCAACTCAAAACCCTAATCCAAGG-TCAGCTTC 172
|| || ||| ||||||| || || ||||| ||||||||| | || | || ||||||||
Sbjct 101 CG--GAGGGAGCTCATATCACTGTTTCCCAGCTCAAAACCTTGAT-CGCGGATCAGCTTC 157
Query 173 AGATCCCTATCCATAACCAAACCTTATCCACCAATCGAAACCTTCTCCTCGCCAAAAC-C 231
|||||||| ||||||| || ||||||||||||||||| | || |||||||||||||| |
Sbjct 158 AGATCCCTCTCCATAAGCAGACCTTATCCACCAATCGTGATCTCCTCCTCGCCAAAACTC 217
Query 232 CCTGCTGATTTCCTAGGGTTCACCGACATGGCCGATCCAAACCTCCGAATCTCGTCTCTC 291
|| |||||| | || | ||||||||| | | || |||||||||| |||| ||||||
Sbjct 218 CC-GCTGATCTACTCGCCTTCACCGACCTCACGGACCCAAACCTCCCCCTCTCCTCTCTC 276
Query 292 AATCTCGCCCACGGCTCTATGCTCTACCTTGCTTACGAAGGTGAGCGCACGATTCGC-GG 350
|| |||| ||| ||||||||||||||||| || ||||| || |||||| | |||| | ||
Sbjct 277 AACCTCGGCCATGGCTCTATGCTCTACCTCGCCTACGATGGCGAGCGCTCCATTC-CTGG 335
Query 351 TGGC-CCTGCCGTTACACCTGCTGGTTCCTTCGGGAGGAAGATGACCGTCGAAGATC-TA 408
|| ||| ||||||| ||||| || |||||||||||||||||||||||||| || | |
Sbjct 336 -AGCTCCTCCCGTTACTCCTGCCGGATCCTTCGGGAGGAAGATGACCGTCGATGA-CTTG 393
Query 409 ATCGCACGGCAGATGCGCGTCGGTCGCCAGGAGAAGTCTCACTGCGATTCCGTCTCGTTC 468
||||| || |||||||||||| ||| ||||||| |||||||||||| |||||||| |||
Sbjct 394 ATCGCCCGCCAGATGCGCGTCACTCGTCAGGAGACGTCTCACTGCGACTCCGTCTCCTTC 453
Query 469 GATCGCGATTG-CGCCAACGCGTTT-CAGCATTACGTCAACGAGTCGCTTGCCTTCGCTG 526
|||||||| || ||||||||| ||| ||||| |||||||| ||||| || || || || |
Sbjct 454 GATCGCGA-TGCCGCCAACGC-TTTCCAGCACTACGTCAATGAGTCTCTAGCTTTTGCCG 511
Query 527 TCAAACGCGGTGGATTCATGTACGGTAACGTCTCTGAGCAAGGTCAGGTTG-AGGTGAAT 585
|||| ||||| || || |||||||| | |||| | ||| |||| ||||| | || || ||
Sbjct 512 TCAAGCGCGGCGGCTTTATGTACGGCACCGTCACCGAGGAAGGACAGGTGGAAGTTG-AT 570
Query 586 TTCATCTACGAGCCACCGCAGCAAGGGATGGAGGATAATCTGATTCTGATGAGAGACT-C 644
||||| |||||||| || |||||||| | ||||| |||||| |||||||||||||| | |
Sbjct 571 TTCATTTACGAGCCGCCCCAGCAAGGCACGGAGGCTAATCTTATTCTGATGAGAGA-TGC 629
Query 645 TGAGGAAGAGAAACGTGTTGATGCTATTGCTTTAGGG-TTAGGGATGAGGAGAGTTGGGT 703
||| |||||||| || || || || || || | ||| || ||||||||||| | | |||
Sbjct 630 TGATGAAGAGAAGCGCGTGGACGCAATCGCCAT-GGGCTTGGGGATGAGGAG-GGTCGGT 687
Query 704 TT-ATATTCAACCAGACTGTGACT-CAGGACAAGAAGGAGTACACTTTGTCTAACGTTGA 761
|| || || |||||||| ||| | |||||||||| || |||||| |||| |||| ||
Sbjct 688 TTCATTTTTAACCAGACCGTG-GTGCAGGACAAGACTGAATACACTCTGTCCAACGCCGA 746
Query 762 GGTGTTGCTTGCGGCGCAGCTTCACGCCGAGAGCGAATTGAAGGAGTGGGTCACTGCGGT 821
|||| | | |||||| ||||||||||||||||||| |||||||||||||||| |||||
Sbjct 747 GGTGCTACAGGCGGCGGAGCTTCACGCCGAGAGCGAGCTGAAGGAGTGGGTCACGGCGGT 806
Query 822 TGTGAAGCTTGAGATCAACGAGGATGGT-GCTGCTGATGTTCACTTCGAGGCGTTTCAGA 880
|||||||||||| | || ||||||||| || || ||||| || |||||||||||||| |
Sbjct 807 GGTGAAGCTTGAGGTGAATGAGGATGGTGGC-GCCGATGTCCATTTCGAGGCGTTTCAAA 865
Query 881 TGAGTGATATGTGCGTTAGGTTGTTTAAGGAAGGA-TGGTTCGAGACTGAGATTGGAT-C 938
|||||||||||||| | ||| |||| |||||| || ||||||||||| |||||| || |
Sbjct 866 TGAGTGATATGTGCATCAGGCTGTTCAAGGAA-GAGTGGTTCGAGACGGAGATT--ATGC 922
Query 939 C-GAGGATGATCCCAAGCTCTCCAAGTTGAAGAAAGAGGTTGTTGTTGGAGTCAAGGA-C 996
| || |||||||| |||||||| ||| ||||||| ||||| |||||||| || ||||| |
Sbjct 923 CGGACGATGATCCAAAGCTCTCTAAGATGAAGAAGGAGGTGGTTGTTGGTGTGAAGGATC 982
Query 997 GTTAAAGAAGTCGACAATGATTTCTTCCTTGTTCTCGTCAAGATCTTGGATCATCAGGTA 1056
|||| || || || || ||||||||||| |||||||||| |||||||||||| ||||
Sbjct 983 -TTAAGGAGGTAGATAACGATTTCTTCCTCGTTCTCGTCAGGATCTTGGATCACCAGGGG 1041
Query 1057 CCTTTGTCGTGC-ACCTTCCCGATAGAGAACCGGAACATTCAAACAACAATGCGGGCTTT 1115
||| |||| | | || ||||| ||||||||||||| || || | |||| ||||||||| |
Sbjct 1042 CCTCTGTCAT-CAACATTCCCAATAGAGAACCGGAGCAGTCGAGCAACGATGCGGGCTCT 1100
Query 1116 GAAAACGCATATGGAGCGAGCAAGGAGCCTCCCATTTGTGAAGAGGATCTCTGATTTTCA 1175
||||| ||| |||| || |||| |||| | || || ||||||| ||| || ||||||||
Sbjct 1101 AAAAACACATCTGGACCGGGCAAAGAGCTTGCCGTTGGTGAAGAAGATGTCAGATTTTCA 1160
Query 1176 TCTGCTTCTCTTTGTGGCTCAGTTTCTAGACGTATCATCCGACGTCCCTGCGTTGGCTGA 1235
||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || || ||
Sbjct 1161 TCTGCTTCTCTTTGTGGCTCAGTTTCTGGACGTGTCATCGGACGTCCCTGCTTTAGCCGA 1220
Query 1236 GTGCGTCCGTCTTCAGTCTCATGTCCCTGAGGGTTATGAGTTGCTCATCGACTCCATGGC 1295
||| || ||||| ||||| | |||||| ||||| |||| |||||||||||| || |||||
Sbjct 1221 GTGTGTGCGTCTGCAGTCGCCTGTCCCAGAGGGCTATGCGTTGCTCATCGAATCAATGGC 1280
Query 1296 CAATACTTCTTAAATTTT 1313
||| |||| |||| ||||
Sbjct 1281 CAACACTTGTTAATTTTT 1298
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69678356460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5