BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486807 Length=624 Score E Sequences producing significant alignments: (Bits) Value AT3G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 737 0.0 > AT3G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 5 Blast hits to 5 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:23296572-23297225 REVERSE LENGTH=654 Length=654 Score = 737 bits (399), Expect = 0.0 Identities = 568/643 (88%), Gaps = 37/643 (6%) Strand=Plus/Plus Query 1 CATGACTAGAGGCATGACACCAACAAACGCAAAGTTAGTAGTCATCTCACTGATTTGGGC 60 ||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||| Sbjct 16 CATGACTAGAGGCATGATACCAACAAAAGCAAAGGTAGTAGTCATCTCACTGATTTGGGC 75 Query 61 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 135 Query 121 GTGCAAGCACGACTGCAAACATGATATCCACAACA-G--GAAAGAGTGTGAAGATAGGTG 177 |||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||| Sbjct 136 GTGCAAGCACAACTGTAAACATGATATCCACAACAAGAAGAAAGAGTGTGAAGATAAGTG 195 Query 178 CAATGAACAGATGATGATGGAGATGGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 237 |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 196 CAATGAACTGTTGATGATGGAGATAGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 255 Query 238 CAATCCCTTCTGCGATGCATTTTGCAAACCCTTTGAAGGACTCTATCAACAATGCATGGC 297 |||||||||||| || ||||||||||| |||||||||||||||| |||||| |||||||| Sbjct 256 CAATCCCTTCTGTGAGGCATTTTGCAACCCCTTTGAAGGACTCTTTCAACATTGCATGGC 315 Query 298 CGTTTGCCCTCGCACCAAGTCCATAG--GAG--GA-G---AT-GG-GG------T-T-GC 339 ||||||||||||||||||||||| | ||| || | || || || | | || Sbjct 316 CGTTTGCCCTCGCACCAAGTCCAAACCAGAGATGATGGTCATAGGAGGAGAAGGTGTTGC 375 Query 340 TAACGGGGAGTT-GCAGGCATACTGCAACAGAAAATGCCCATCTTACATTGGACCAGAGG 398 ||| | || ||| |||| || | |||||||||||||||| ||||||| | ||| |||| Sbjct 376 TAATGAGG-GTTTGCAGACAAAATGCAACAGAAAATGCCTGTCTTACACCGAACCGGAGG 434 Query 399 CCTACAAAAAATGCATGTCCGGATGCTTCACGTCCAACGAGGAAGTCTGCGAGACATCGT 458 |||| ||||||||||| ||||||||||||| |||||||||||||||||| |||||||||| Sbjct 435 CCTATAAAAAATGCATATCCGGATGCTTCATGTCCAACGAGGAAGTCTGTGAGACATCGT 494 Query 459 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 495 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 554 Query 519 TTCCCGGAGCTGTTGCTTCTTCTACTTAATGTTTAAAATCTTTTAAGAAGGGATTTCTAA 578 ||||||||| ||| || || ||||||||||||| | | | | |||| || ||| Sbjct 555 TTCCCGGAGTTGTAGC--CT-CTACTTAATGTTTTA---CG---A-G--GGGACTTGTAA 602 Query 579 GGAATAAGTGTGTGTGTTTTTGGTGTAAGAATCCAAATTAAAA 621 ||||||||||||| | | ||||||||||||||||||||||||| Sbjct 603 GGAATAAGTGTGT-T-TCTTTGGTGTAAGAATCCAAATTAAAA 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30090254053 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5