BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486807
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 737 0.0
> AT3G63040.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 5 Blast hits to 5
proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 5; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:23296572-23297225 REVERSE LENGTH=654
Length=654
Score = 737 bits (399), Expect = 0.0
Identities = 568/643 (88%), Gaps = 37/643 (6%)
Strand=Plus/Plus
Query 1 CATGACTAGAGGCATGACACCAACAAACGCAAAGTTAGTAGTCATCTCACTGATTTGGGC 60
||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 16 CATGACTAGAGGCATGATACCAACAAAAGCAAAGGTAGTAGTCATCTCACTGATTTGGGC 75
Query 61 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TATTCTGGTGTTGGAAAGTGCAACAGTGTCAAGTGCAGTAGAAGATTTGGTGGTGGAACA 135
Query 121 GTGCAAGCACGACTGCAAACATGATATCCACAACA-G--GAAAGAGTGTGAAGATAGGTG 177
|||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 136 GTGCAAGCACAACTGTAAACATGATATCCACAACAAGAAGAAAGAGTGTGAAGATAAGTG 195
Query 178 CAATGAACAGATGATGATGGAGATGGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 237
|||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 196 CAATGAACTGTTGATGATGGAGATAGAGAAAGAGACAAGTGGACGACAAGAAGAAGAACA 255
Query 238 CAATCCCTTCTGCGATGCATTTTGCAAACCCTTTGAAGGACTCTATCAACAATGCATGGC 297
|||||||||||| || ||||||||||| |||||||||||||||| |||||| ||||||||
Sbjct 256 CAATCCCTTCTGTGAGGCATTTTGCAACCCCTTTGAAGGACTCTTTCAACATTGCATGGC 315
Query 298 CGTTTGCCCTCGCACCAAGTCCATAG--GAG--GA-G---AT-GG-GG------T-T-GC 339
||||||||||||||||||||||| | ||| || | || || || | | ||
Sbjct 316 CGTTTGCCCTCGCACCAAGTCCAAACCAGAGATGATGGTCATAGGAGGAGAAGGTGTTGC 375
Query 340 TAACGGGGAGTT-GCAGGCATACTGCAACAGAAAATGCCCATCTTACATTGGACCAGAGG 398
||| | || ||| |||| || | |||||||||||||||| ||||||| | ||| ||||
Sbjct 376 TAATGAGG-GTTTGCAGACAAAATGCAACAGAAAATGCCTGTCTTACACCGAACCGGAGG 434
Query 399 CCTACAAAAAATGCATGTCCGGATGCTTCACGTCCAACGAGGAAGTCTGCGAGACATCGT 458
|||| ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 435 CCTATAAAAAATGCATATCCGGATGCTTCATGTCCAACGAGGAAGTCTGTGAGACATCGT 494
Query 459 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 GCAGTATTCTTCAAGAGGAACCGCTCACTATAAGGTGCATGAGGATTTGCCATGAGAGAA 554
Query 519 TTCCCGGAGCTGTTGCTTCTTCTACTTAATGTTTAAAATCTTTTAAGAAGGGATTTCTAA 578
||||||||| ||| || || ||||||||||||| | | | | |||| || |||
Sbjct 555 TTCCCGGAGTTGTAGC--CT-CTACTTAATGTTTTA---CG---A-G--GGGACTTGTAA 602
Query 579 GGAATAAGTGTGTGTGTTTTTGGTGTAAGAATCCAAATTAAAA 621
||||||||||||| | | |||||||||||||||||||||||||
Sbjct 603 GGAATAAGTGTGT-T-TCTTTGGTGTAAGAATCCAAATTAAAA 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5