BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486808

Length=464
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63050.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   542    1e-153


> AT3G63050.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT2G48075.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr3:23297891-23298389 REVERSE LENGTH=499
Length=499

 Score =  542 bits (293),  Expect = 1e-153
 Identities = 393/439 (90%), Gaps = 16/439 (4%)
 Strand=Plus/Plus

Query  1    ATGCAGAGAGGAAAAGATGATG---ACAAGAGAGGCATTTTTCGCCGGCTTTTAAGGTTG  57
            |||||||||| ||| |||||||   ||||||||||  ||||||| |||||||||| ||||
Sbjct  18   ATGCAGAGAGCAAATGATGATGACAACAAGAGAGGGTTTTTTCGGCGGCTTTTAAAGTTG  77

Query  58   GTGGTCGTTAAACTCAT-----G-AAGGGTCACAAGGAAGATAGGTCTGTGACGAAGAAA  111
            ||| |||||||||||||     |   ||||||||||||||||| ||||||||| ||||||
Sbjct  78   GTGTTCGTTAAACTCATGGCGGGTGCGGGTCACAAGGAAGATAAGTCTGTGACAAAGAAA  137

Query  112  CTGATCAAGAAAGAATCAAAATCTGATATCACAATTTATTTCAAGCAAAGAGAAGACTCC  171
            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct  138  CTGATCAAGAAAGAATCAAAGTCTGATATCACAATTTATTTCAAGCAAAGAGAAGAGTCC  197

Query  172  GAGGATAAC---GCAAATCCCATCAATTTCTCAAGAAGCTCGGAGAAAGAGAGGGTGATC  228
            |||||||||   || |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct  198  GAGGATAACAACGCTAATCCCATCAATATCTCAAGAAGCTCGGAGAAAGATAGGGTGATC  257

Query  229  ATGCTGGTTAATGGTAGTAACGGCTCAAAGAAGAACTTGGCGAGTGAGCTGAGCGTTAGG  288
            |||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||
Sbjct  258  ATGCTGGTTAATGGTAGTAACGGCTCAAAGAAGAACTTAGCGAGTGAGCTAAACGTTAGG  317

Query  289  CGATCAGTAGCTCAAACTGGAGCTGGTA-TG--ACACAGCCGAAGCCTCTTTTCAATGAT  345
            |||||||||||||||||||||||||||  ||  |||||||||||||||||||| ||||||
Sbjct  318  CGATCAGTAGCTCAAACTGGAGCTGGTGGTGTGACACAGCCGAAGCCTCTTTTGAATGAT  377

Query  346  ATAAATACGAAATCGCATGCTTTCATTGAGAGTAGACTCGCCAAGATGCGAAAAGGCTTA  405
            ||||| || ||||| |||||||||||| ||||||||||||  ||||||||||||||||| 
Sbjct  378  ATAAACACTAAATCACATGCTTTCATTCAGAGTAGACTCGAGAAGATGCGAAAAGGCTTG  437

Query  406  TAGCCAAAAAACATGATGA  424
            ||||||||   ||||||||
Sbjct  438  TAGCCAAATG-CATGATGA  455



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22052790533


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5