BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486809
Length=159
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63052.1 | Symbols: | unknown protein; Has 30201 Blast hits... 130 4e-30
> AT3G63052.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:23298911-23299111
REVERSE LENGTH=201
Length=201
Score = 130 bits (70), Expect = 4e-30
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 78 GCTGAGACGCGTTTGTGGAGCTTATGTGGTCTCTCCGCCGATGATATCATGGCCGTTCGA 137
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 GCTGAGACGCGTGTGTGGAGCTTATGTGGTCTCTCCGCCGATGATATCATGGCCGTTCGA 171
Query 138 CAGTTATTCACCT 150
|||||||||||||
Sbjct 172 CAGTTATTCACCT 184
Score = 108 bits (58), Expect = 2e-23
Identities = 70/75 (93%), Gaps = 3/75 (4%)
Strand=Plus/Plus
Query 1 ATGGGTCAAATGGGCTTG-CCTAAGTTCCGACCCAGGAAAGTCCCCGGGCTACT-ATCCG 58
|||||||| ||||||||| || |||||||||||||||||||||||||||| ||| |||||
Sbjct 1 ATGGGTCATATGGGCTTGTCC-AAGTTCCGACCCAGGAAAGTCCCCGGGCCACTTATCCG 59
Query 59 CAGAGATGCGGCCTC 73
|||||||||||||||
Sbjct 60 CAGAGATGCGGCCTC 74
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 6840983736
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5