BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486810
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63060.1 | Symbols: EDL3 | EID1-like 3 | chr3:23300290-23301... 1445 0.0
> AT3G63060.1 | Symbols: EDL3 | EID1-like 3 | chr3:23300290-23301473
REVERSE LENGTH=1184
Length=1184
Score = 1445 bits (782), Expect = 0.0
Identities = 886/934 (95%), Gaps = 15/934 (2%)
Strand=Plus/Plus
Query 1 AATGCTTCTAGAGGGAAAATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAGATT 60
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 17 AATGCTTCTAGAGGGAAGATTCTCCGTCGTCCAGATGAACACGAATAGACGGCTCAAATT 76
Query 61 TAACCAACCGAGTCGATTACCCAGCTCAGGTGAGTCAGGTATAGAGAACGAGCGAGTCCT 120
||||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||||
Sbjct 77 TAACCAACCGAGTCGATTACCCAACTCGGGTAAGTCAGGTATAGAGAATGAGCGAGTCCT 136
Query 121 GGTTCTCGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCGCAATTGCCTCCCT 180
|||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 137 GGTTCTTGTCTTCGAGTCCATTAGCTGGGACATCCACACGCTATGCACAATCGCCTCCCT 196
Query 181 CAGCCGCAGATTCTGCGCAATCGCCAAACGAATTCTGTGGCGGCGGCTCTGCGTAAACCG 240
|||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||
Sbjct 197 CAGCCGCAGATTCTGCGCAATCGCCAGACGAATTCTGTGGCGGCGGCTCTGTGTGAACCG 256
Query 241 TGCGCCGGGGATGGTGGCAGCATTGTCCGGCTCAGATCCCAGCGGCCGGATCGACGGCGG 300
|||||| ||||||||||| |||||||||||| |||||||||||| || |||||||||||
Sbjct 257 TGCGCCAGGGATGGTGGCGGCATTGTCCGGCGAAGATCCCAGCGGTCGAATCGACGGCGG 316
Query 301 ATGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGCCGGAGGTGAGTCGACTCGGTATTT 360
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 317 CTGGCACGCGTTAGCGAAACTCATGTTCTTCTGCGGCGGGGGTGAGTCGACTCGGTATTT 376
Query 361 CAATCTGAGTCAACCGTCGCCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 420
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 377 CAATCTGAGTCAACCGACGTCGGGTCACTTCGCCTGCGAGTCCAGATTCTCCAAGACATC 436
Query 421 CGGGAGATTCTTCCTGCCGAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 480
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 437 CGGGAGATTCTTCCTGCCAAAGAATTGCCGCCGTGATCTCCTATACATGAGCGATCCGTG 496
Query 481 CGAGCATCACGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 540
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CGAGCATCAGGCGGTGGGTGGAGATGAGCATTTAGGGGTTTTCAGAGGGGTATTTCGGGA 556
Query 541 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 ATTTATGAGGTCAAAGACGAGGGAGTGTCTCGTGAGAAGACAAGCGGCGCTGGAGGAGAA 616
Query 601 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTTGTCCC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 617 GGTTAGGTGTCCGTATTGCGGAGGGCGCGTGTGGAGCATGACGGCGGCGCGTCTCGTCCC 676
Query 661 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTATGCGT 720
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 677 GAAGAGTGCGGCGCGGCGGCTGGGATCACGTGAAGGTGGGTTAGAGTTCTTCGTGTGCGT 736
Query 721 CAACGGTCACTTGCACGGCACCTGCTGGCTGATTCCGCTTTCGTCGGA--A-GAAGA-A- 775
|||||||||||||||||||| |||||||||||||||||||| ||||| | ||||| |
Sbjct 737 GAACGGTCACTTGCACGGCACTTGCTGGCTGATTCCGCTTTCATCGGAGGAAGAAGACAA 796
Query 776 -G-A-----CGACGACAACAGTGACGGCAGTGTGATCTAATCCAATGGTGGTGGCGATGT 828
| | |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 797 TGGAGAAGACGACGACAACAGTGACGGAAGTGTGATCTAATCCAATGGTGGTGGCGATGT 856
Query 829 CCACGTGGAATTAGGTCTCTTGGGGCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 888
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 857 CCACGTGGAATTAGGTCTCTTGGGCCATATGCAAACCACAAGAGGAAAATCTCAGTTAGA 916
Query 889 TTCATTCTCCTATGACATGTGGAGCTCACTAGTA 922
|| | ||||||||| ||||||||||||||||||
Sbjct 917 TT--T-CTCCTATGAGATGTGGAGCTCACTAGTA 947
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5