BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486812
Length=1212
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63090.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase... 1770 0.0
> AT3G63090.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr3:23313428-23314989 FORWARD LENGTH=1562
Length=1562
Score = 1770 bits (958), Expect = 0.0
Identities = 1136/1221 (93%), Gaps = 15/1221 (1%)
Strand=Plus/Plus
Query 1 ATGGTGTTCAGAAACTTAACCATTTCTTACGAAATCATCAAATGTCTG-AA-A----AAA 54
|||||| |||||||||||||||||||||||||||||||||||| |||| || | |||
Sbjct 190 ATGGTGCTCAGAAACTTAACCATTTCTTACGAAATCATCAAATCTCTGAAACATGCCAAA 249
Query 55 GAGCCTAGTTTATTAGGGCTTCAAATCAGATCGATCTCGAGCTTGAAAGTGGTATGGAAG 114
|| | ||| | |||||| |||||||| ||| |||||||||| |||||||||||||||||
Sbjct 250 GAACATAG--T-TTAGGGATTCAAATCCGATGGATCTCGAGCCTGAAAGTGGTATGGAAG 306
Query 115 AAAGACACGAGGCTAGACGAAGCCATCGAGCAGGACAAGCGTTACAAGCTCTGTGCTCGG 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AAAGACACGAGGCTAGACGAAGCCATCGAGCAGGACAAGCGTTACAAGCTCTGTGCTCGG 366
Query 175 GTGGTTAAAGAAGTGCTGAACGAGCCAGGTCAAGTCATTCCTCTCAGATACCTCGAGAAA 234
|| || |||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 367 GTTGTGAAAGAAGTCCTGAACGAGCCAGGTCAAGTCATTCCTCTCAGATACCTCGAAAAA 426
Query 235 CGCCGCGAGAGGTTACGTCTCACTTCCAAAGCTAAGAGCTTTATCGAGATGAACCCTTGT 294
|| ||||||||| |||||||||||| |||||||||||||||| | || ||||||||||
Sbjct 427 CGGCGCGAGAGGCTACGTCTCACTTTCAAAGCTAAGAGCTTTGTTGAAATGAACCCTTCC 486
Query 295 CTGTTCGAGATCTACTACGATCGGATCAAACCCAAGTCGGATCTCGTTCAATTCATCCGC 354
|||||||||||||||||||||||||||||||||||||| |||| ||| |||||| |||||
Sbjct 487 CTGTTCGAGATCTACTACGATCGGATCAAACCCAAGTCCGATCCCGTCCAATTCCTCCGC 546
Query 355 CCAACGCCTCGTCTCAGAGCTTTCCTCGACGAAGAACAGAGGATTTACGCTGAGAATGAG 414
|| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 547 CCCACGCCTCGTCTCAGAGCTTTCCTCGACGAAGAGCAGAGGATTTACTCTGAGAATGAG 606
Query 415 CCCTTGA-TTGTTTCCAAGCTCTGCAAATTGCTGATGATGGCTAAAGATAAGGTTATCAG 473
|||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 607 -CCTTTACTTGTTTCCAAGCTCTGCCAATTGCTGATGATGGCTAAAGATAAGGTTATCAG 665
Query 474 TGCGGATAAGCTGGTTCATGTGAAGAGAGATTTCGGATTCCCGAATGATTTTCTGATGAA 533
||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 666 TGCAGATAAACTGGTTCATGTGAAGAGAGATTTCGGATTTCCGAACGATTTTCTGATGAA 725
Query 534 ATTGGTTCAGAAATACCCTAATTATTTCAGGCTAACTGGTTTACCTGAAGAAGGTAAGTC 593
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 726 ATTGGTTCAGAAATACCCTAATTACTTCAGGCTAACCGGTTTACCTGAAGAAGGTAAGTC 785
Query 594 CTTTCTTGAGCTCGTCTCTTGGAACCCTGATTTCGCCAAATCGAAGATTGAACAGAGAGC 653
|||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 786 CTTTCTTGAGCTAGTCTCTTGGAACCCTGATTTCGCCAAATCGAAGATTGAGCTGAGAGC 845
Query 654 AGAAGACGAAG-CTCTTCAAACCGGTGTCCGGGTTCGACCCAATTTCAATGTGAAATTGC 712
|||||||| || | ||| |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 846 AGAAGACG-AGACCCTTAAAACCGGTGTCCGGATTCGACCCAATTACAATGTGAAATTGC 904
Query 713 CGTCTGGGTTTTTCCTAAGGAAGGAGATGAGAGAGTGGACTAGGGATTGGTTAGAGCAAG 772
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 905 CGTCTGGTTTTTTCCTAAGGAAGGAGATGAGAGAGTGGACTAGGGATTGGTTAGAGCAAG 964
Query 773 ACTACATATCACCCTATGGA-GATGTGTCTCATTTAGACCAAGCTTCCAAGGAAATGGAG 831
||||||||||||| ||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 965 ACTACATATCACCATAT-GAGGATGTGTCTCATTTAGACCAAGCTTCTAAGGAAATGGAG 1023
Query 832 AAACGAACTGTTGCCGTTGTGCACGAATTGCTGTCTCTTTCGCTTTTGAAAAGAGTCCCT 891
||||||||||||| ||||||||||||||||| ||||| || || |||||||||||||||
Sbjct 1024 AAACGAACTGTTGGTGTTGTGCACGAATTGCTTTCTCTGTCACTGTTGAAAAGAGTCCCT 1083
Query 892 GTGCCTACACTTGGCAAGTTCTGCCATGAATTCCGGTTTTCAAACGCCTTCTCGAGTGTT 951
|||||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 1084 GTGCCTACACTTGGCAAGTTCTGCGATGAGTTCCGGTTTTCCAACGCGTTCTCGAGTGTT 1143
Query 952 TTCACTCGTCATTCAGGTATATTCTACTTGTCACTAAAAGGAGGGATCAAGACTGCAGTG 1011
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1144 TTCACTCGTCATTCAGGTATATTCTACTTGTCGTTAAAAGGAGGGATCAAGACTGCAGTG 1203
Query 1012 TTGAGAGAAGCTTATAAAGACGATGAGCTTGTTGATAGAGATCCTTTGCTTGCTATTAAG 1071
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TTGAGAGAAGCTTATAAAGACGATGAGCTTGTTGATAGAGATCCTTTGCTTGCTATTAAG 1263
Query 1072 GATAGGTTCCTCAGCTTATTAGAGGAAGGATGGCAAGAAAGGAAAGATAGACTCAAACAG 1131
|||| |||||| || |||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1264 GATAAGTTCCTGAGGTTATTAGAGGAAGGATGGCAAGAAAGGAAAGATAGACTGAAGCTG 1323
Query 1132 CAGAGGGAACAAGTTCAGAAAGATAGGGAGTTGCTATTAGCAACGAAAAGCAATGAACCT 1191
||||||||||||||||||||||| |||||| || | |||||| ||||||||||||||||
Sbjct 1324 CAGAGGGAACAAGTTCAGAAAGACAGGGAGATGATGTTAGCAGCGAAAAGCAATGAACCG 1383
Query 1192 AAAGAGCGTCTCTGTGATTAA 1212
| |||||||||||||||||||
Sbjct 1384 ATAGAGCGTCTCTGTGATTAA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59537846370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5