BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486813
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63095.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 880 0.0
> AT3G63095.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:23315506-23316258 FORWARD LENGTH=753
Length=753
Score = 880 bits (476), Expect = 0.0
Identities = 673/758 (89%), Gaps = 53/758 (7%)
Strand=Plus/Minus
Query 1 TCAGCTAATGAGTCTGCCTCCACAGACGAAAGTGACGATGCATGACTCATCCACAAAGAC 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 753 TCAGCTAATGAGTCTGCCTCCACAGACGAAAGTGACGATACATGACTCATCCACAAAGAC 694
Query 61 TGTATAGTTATGAATTGGTTTGGCTAGCAATGGCGGAAGCCGGACCAGAAGGTCGCACAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 TGTATAGTTATGAATTGGTTTGGCTAGCAATGGCGGAAGCCGGACCAGAAGGTCGCACAC 634
Query 121 GCACTCGTTGTCCATTTGCTTCAACCACTTGCAGCAATCTTGTTGCGCAAACGTCTCTTC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 633 GCACTCGTTGTCCATTTGCTTCAACCACTTGCAGCACTCTTGTTGCGCAAACGTCTCTTC 574
Query 181 ACtgtgtcgatgatggtgtcggtggtggtggcggtggtgtcgacggcggtggtgatcgtc 240
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 573 TCTGTGTCGATGATGGTGGCGGTGGTGGTGGCGGTGGTGTCGACGGCGGTGTTGATCGT- 515
Query 241 gtggCTGTTGTCGTCATTATTGTGGTGGTCG-CTGTCATGATCATGGTCGTGATTATGGT 299
| | |||||||||||||| |||||||||||| | |||||||| |||||||||||| | ||
Sbjct 514 G-G-CTGTTGTCGTCATTGTTGTGGTGGTCGGC-GTCATGATTATGGTCGTGATTGTTGT 458
Query 300 CATTGTGATCATTGTCACGGTCGTGGTTATGGTTATggtcatcgtgatcacggtcacgat 359
||||||||||||||||| |||| |||||||||| ||||||||||||| |||||||| |||
Sbjct 457 CATTGTGATCATTGTCATGGTCATGGTTATGGTCATGGTCATCGTGAGCACGGTCATGAT 398
Query 360 c------acggtc----tcg---tca---tca---tca---t---ggtcatcgtc---at 391
| |||||| ||| ||| ||| ||| | |||||||||| ||
Sbjct 397 CGCGGTCACGGTCACGGTCGCGGTCACGGTCACGGTCACGGTCACGGTCATCGTCGTCAT 338
Query 392 ggtcgtgatcgtggtcatcatcgtggtcgtggtcatcatcatcatcgtggtcatcgtcat 451
|||||||||| | ||||| ||||| |||||||||||||| | || |||||||| ||||
Sbjct 337 GGTCGTGATCATCGTCATGGTCGTGATCGTGGTCATCATCGTGGTCATGGTCATCATCAT 278
Query 452 gatcgtggtc---gt-g-g-tcatggtc------atggtcatggtcgtggt-g-g-t--- 493
||||||||| || | | || ||||| ||||||||||||||||| | | |
Sbjct 277 CATCGTGGTCATCGTCGTGGTCGTGGTCGTGGTCATGGTCATGGTCGTGGTCGTGGTGGT 218
Query 494 catggtcaggaggcgggggagcgatgggaggaggaggtggggtaatgggggcaggtggtg 553
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 217 CATGTTCAGGAGGCGGGGGAGCGATGGGAGCAGGAGGTGGGGTAATGGGGGCAGGTGGTG 158
Query 554 ggaCAGTGTGCATTGGGAGACGTGAGCAGGCGTAGTTAGCCAGAGCGTATTGAGACGCGC 613
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 157 GGACAGTGTGCATTGGGAGACGTGAGCAGGCGTAGTTAGCTAGGGCGTATTGAGACGCGC 98
Query 614 ACAGTGGACGTGGCGGTGGAATCTGTATCACTCTCTGGCCTCTTGTGAAAGAGGAGAGAG 673
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 ATAGTGGACGTGGTGGTGGAATCTGTATCACTCTCTGGCCTCTTGTGAAAGAGGAGAGAG 38
Query 674 CGAGAGCCAGAGT-AGCTGCAATAAAAAGTGTATCCAT 710
||||||||||||| | ||||||||||||||||||||||
Sbjct 37 CGAGAGCCAGAGTTA-CTGCAATAAAAAGTGTATCCAT 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34410390695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5