BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486815
Length=962
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23322956-23... 1256 0.0
> AT3G63120.1 | Symbols: CYCP1;1 | cyclin p1;1 | chr3:23322956-23324247
REVERSE LENGTH=1009
Length=1009
Score = 1256 bits (680), Expect = 0.0
Identities = 833/905 (92%), Gaps = 18/905 (2%)
Strand=Plus/Plus
Query 1 CACATTTCTTCGCGGCTTCTTTTAGCTTTTTAGCTTC--AG-AGC-----AACAACAATG 52
|||| ||||||||||||||||||||||| | |||||| || ||| || |||||||
Sbjct 1 CACAATTCTTCGCGGCTTCTTTTAGCTTCTAAGCTTCAGAGCAGCAAAAAAAAAACAATG 60
Query 53 GAGAAGCGCCGGAGATAGATCTGCTTTCTTCCAATCTCTGGACCTTCTCTAGTTCAAGAA 112
||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||
Sbjct 61 GAGAAGCGCCGGAGATAGATCTGCTTTCTTCCATTCTCCGGACCTTCTCTAGTTCACGAA 120
Query 113 CCAACTTCCTCCACTTAATTCTCATTCATTGCAGAGATGGGCTCTCTCGCAACCGATCCA 172
|||||||| ||||||| |||||||||| ||| ||| |||| |||||||||||||||||||
Sbjct 121 CCAACTTCTTCCACTTTATTCTCATTCGTTGGAGAAATGGACTCTCTCGCAACCGATCCA 180
Query 173 GGTTTCATTGATTCGGATGTATACCTCAGATTAGGACTTATCATTGAGGGCAAACGATTG 232
| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 181 GCTTTCATTGATTCGGATGTATACCTCAGGTTAGGACTTATTATTGAGGGCAAACGATTG 240
Query 233 CAAAAGCCACCCACTGTTCTCTCCCGCCTCTCTTCATCTCTGGAGAGATCTCTGTTGCTC 292
|||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 241 AAAAAGCCACCGACTGTTCTCTCACGCCTCTCTTCTTCTCTGGAGAGATCTCTGTTACTC 300
Query 293 AATC---ATGACAATATTCTGAC-TGAATCGCCAGACTCTGTTACCGTCTTTGATGGGAG 348
|||| ||||||| |||||| | || ||||||||||||||||||||| ||||| |||||
Sbjct 301 AATCATGATGACAAGATTCTG-CTTGGATCGCCAGACTCTGTTACCGTGTTTGACGGGAG 359
Query 349 ATCTCCCCCTGAGATCAGCATTTCACACTACTTGGATCGCATTTTCAAGTACTCTTGCTG 408
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 360 ATCTCCCCCTGAGATCAGTATTGCACACTACTTGGATCGCATTTTCAAGTACTCTTGCTG 419
Query 409 CAGCCCCTCCTGCTTCGTCATTGCACATATCTACATTGATCACTTTCTCCACAAGACCCG 468
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 420 CAGTCCCTCCTGCTTCGTCATTGCGCATATCTACATTGATCACTTTCTCCATAAGACCCG 479
Query 469 AGCCCATCTCAAACCGCTTAATGTCCACCGCCTTATCATAACAAGTGTCATGTTAGCCGC 528
||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct 480 AGCCCTTCTCAAACCCCTTAATGTCCACCGCCTTATCATTACAACTGTCATGTTAGCTGC 539
Query 529 TAAAGTCTTCGATGATAGGTATTTCAACAATGCATACTATGCGAGAGTTGGAGGTGTCAG 588
||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| |
Sbjct 540 TAAAGTCTTCGATGATAGGTATTTCAACAATGCATACTACGCAAGAGTGGGAGGTGTGA- 598
Query 589 C-ACGAGAGAGTTAAACAGATTGGAGATGGAGTTGTTGTTCACCCTTGACTTCAAGCTTC 647
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 599 CTACGAGAGAGTTAAACAGATTGGAGATGGAGTTGTTGTTTACCCTTGACTTCAAGCTTC 658
Query 648 AGGTAGATCCTCAGACGTTTCACACACATTGTTGTCAGTTAGAAAAACAGAACAGCGACA 707
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 659 AGGTAGATCCTCAGACGTTTCACACACACTGTTGTCAGTTAGAAAAGCAGAACAGAGACG 718
Query 708 GCTTCCAGATCGAGTGGCCGATAAAAGAAGCATGTCGAGCCAACAAAGAGACTTGGCAGA 767
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 719 GCTTCCAGATCGAGTGGCCCATAAAAGAAGCATGCCGAGCCAACAAAGAGACTTGGCAGA 778
Query 768 AGAGGACACCCGACTCTGTCTGCTCTCAAACGACAGCACGCTGATCAGCAAGGGTAAGAT 827
|||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||
Sbjct 779 AGAGGACACCCGACTCACTCTGCTCTCAAACCACAGCACGCTGATCGGCAAGGGTAAGAT 838
Query 828 AGGATT-TT--GTGTTTTGGTAGTGATGATTCTTTTGCAAGATTAATTGTTTGTGACAAC 884
|||||| || ||||||| |||||||||||||||||||| |||| ||||||||||||||
Sbjct 839 AGGATTATTTTGTGTTTTAGTAGTGATGATTCTTTTGCATGATTGATTGTTTGTGACAAT 898
Query 885 TGTGT 889
|||||
Sbjct 899 TGTGT 903
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47069395739
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5