BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486816
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding p... 2206 0.0
AT3G63130.1 | Symbols: RANGAP1, ATRANGAP1 | RAN GTPase activati... 69.4 9e-11
> AT3G63140.1 | Symbols: CSP41A | chloroplast stem-loop binding
protein of 41 kDa | chr3:23326867-23328709 REVERSE LENGTH=1449
Length=1449
Score = 2206 bits (1194), Expect = 0.0
Identities = 1368/1451 (94%), Gaps = 16/1451 (1%)
Strand=Plus/Plus
Query 1 GTACAAGAGCCTTACATATTTCTTCTGGTTCTCTGAGGATC-AA--ACCTCAAGTCAGAA 57
|||||||||||||||| | |||||||||||||||||||||| || ||| ||||||||||
Sbjct 1 GTACAAGAGCCTTACAAAATTCTTCTGGTTCTCTGAGGATCAAACCACCACAAGTCAGAA 60
Query 58 CAGAGTAAGGTAAATC-TTAACaaaaaaaaaTGGCGGCTTTATCATCCTCCTCTCTGTTT 116
|||||| |||| |||| ||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 CAGAGTGAGGT-AATCATTACCAACAAAAAATGGCGGCTTTATCATCCTCCTCTCTGTTT 119
Query 117 TTCTCCTCCAAAACAACTTCTCCGATCAGTAATCTCCTGATCCCGCCAtctctccaccgc 176
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 TTCTCTTCCAAGACAACTTCTCCGATCAGCAATCTCCTGATCCCGCCATCTCTCCACCGC 179
Query 177 ttcgctctaccctcttcatcttcctccttttcctctctctcttcttcttcttcttcttct 236
||| ||||||||||||||||||||||| ||| || ||||| || |||||||||||||||
Sbjct 180 TTCTCTCTACCCTCTTCATCTTCCTCC-TTT--TC-CTCTC-TC-TCTTCTTCTTCTTCT 233
Query 237 tcttcttcttctctcttgacattctctctgaggacttctcGAAGGTTATCTCCTCAGGGC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 TCTTCTTCTTCTCTCTTGACATTCTCTCTGAGGACTTCTCGAAGGTTATCTCCTCAAAAA 293
Query 297 TTTACCGTTAAGGCCAGCTCCGTCGGTGATAAGAAGAATGTACTTATAGTCAACACCAAC 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 294 TTTACCGTTAAGGCCAGCTCCGTCGGTGAGAAGAAGAATGTACTTATAGTCAACACCAAC 353
Query 357 AGCGGCGGTCACGCCGTGATCGGGTTTTACTTCGCCAAAGAGCTTCTCTCCGCCGGACAT 416
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 354 AGTGGCGGTCACGCCGTGATCGGGTTTTACTTCGCCAAAGAGCTTCTCTCCGCCGGCCAC 413
Query 417 GGCGTCACCATCATGACCGTCGGCGATGAATCTTCCGACAAGATGAAGAAACCTCCTTTC 476
| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 414 GCCGTCACCATCTTGACCGTCGGCGATGAATCTTCCGAAAAGATGAAGAAACCTCCTTTC 473
Query 477 AACCGATTCTCCGAAATTATCAGCGGCGGAGGAAAGACGGTGTGGGGAAACCCTGCCGAT 536
|||||||||||||||||| | |||||||||||||||||||||||||| ||||| ||| ||
Sbjct 474 AACCGATTCTCCGAAATTGTTAGCGGCGGAGGAAAGACGGTGTGGGGGAACCCGGCCAAT 533
Query 537 GTTGCCAATGTGGTCGGAGCTGAAACATTTGACGTTGTCCTTGACAACAATGGCAAGGAT 596
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 534 GTTGCCAATGTGGTCGGAGGTGAAACATTTGACGTTGTCCTTGACAACAATGGCAAGGAT 593
Query 597 TTGGATACTGTCAGGCCAGTGGTGGATTGGGCTAAAAGCTCCGGCGTGAAGCAATTCTTG 656
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 TTGGATACTGTTAGGCCAGTGGTGGATTGGGCTAAAAGCTCCGGCGTCAAGCAATTCTTG 653
Query 657 TTCATCAGCAGCGCCGGGATCTACAAGTCCACCGAACAACCTCCTCACGTTGAAGGGGAC 716
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 TTCATAAGTAGCGCCGGGATCTACAAGTCCACCGAACAACCTCCTCACGTTGAAGGGGAC 713
Query 717 GCAGTCAAAGCTGACGCAGGTCACGTGG-GAGTGGAGAAGTACTTAGCCGAAACATTCGG 775
||||| ||||| ||||| |||||||||| | |||||||||||||||||||||||||||||
Sbjct 714 GCAGTTAAAGCCGACGCTGGTCACGTGGTG-GTGGAGAAGTACTTAGCCGAAACATTCGG 772
Query 776 GAACTGGTCCTCGTTTCGACCACAGTACATGATCGGCTCTGGCAACAACAAAGACTGCGA 835
||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 773 GAACTGGGCCTCCTTTCGACCGCAGTACATGATCGGCTCTGGCAACAACAAAGACTGCGA 832
Query 836 AGAATGGTTCTTCGACCGGATTGTGAGGGATAGAGCAGTGCCAATCCCAGGATCAGGATT 895
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 833 AGAATGGTTCTTCGACCGGATTGTGAGGGACAGAGCAGTGCCAATCCCAGGATCAGGATT 892
Query 896 GCAGCTAACCAACATATCCCACGTGAGGGACTTGTCTTCGATGCTGACTTCTGCCGTAAC 955
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 893 GCAGCTAACCAACATATCCCACGTGAGGGACTTGTCTTCCATGCTTACTTCTGCCGTTGC 952
Query 956 CAACCCCGAGGCTGCATCCGGAAACATCTTCAACTGCGTTAGCGACAGAGCCGTCACTCT 1015
|||||| |||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 953 CAACCCAGAGGCTGCTTCCGGCAACATCTTCAACTGCGTTAGCGACAGAGCCGTTACTCT 1012
Query 1016 TGACGGTATGGCCAAGCTCTGTGCTGCCGCTACTGGCAAAACGGTTGAGATCGTTCATTA 1075
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1013 TGACGGTATGGCCAAGCTCTGTGCTGCCGCTGCTGGCAAAACTGTTGAGATCGTTCATTA 1072
Query 1076 TGACCCTAAAGCCATTGGCGTTGACGCCAAGAAGGCTTTTCCATTCAGAAACATGCATTT 1135
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1073 TGACCCTAAAGCCATTGGGGTTGACGCCAAGAAGGCTTTTCTATTCAGAAACATGCATTT 1132
Query 1136 CTACGCAGAGCCAAGAGCAGCAAAGGAGATATTAGGGTGGGAAAGTAAAACGAATCTGCC 1195
|||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||
Sbjct 1133 CTACGCAGAGCCAAGAGCCGCTAAGGACTTATTAGGGTGGGAGAGTAAAACGAATCTGCC 1192
Query 1196 TGAAGATCTCAAGGAAAGATTTGAAGAGTATGTGAAGATTGGCAGAGACAAGAAAGAGAT 1255
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGAAGATCTCAAGGAGAGATTCGAAGAGTATGTGAAGATTGGCAGAGACAAGAAAGAGAT 1252
Query 1256 CAAGTTTGAGTTAGACGATAAGATACTCGAAGCCCTCAAAACTCCAGTGGCGGCTTGATC 1315
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1253 TAAGTTTGAGTTAGACGATAAGATACTCGAAGCCCTCAAAACTCCAGTGGCCGCTTGATC 1312
Query 1316 AAAATAGGCCATAAAGTTTCTTCTTCAGTTGTAACTTCTAATGCTACCCTGTGCTCtttt 1375
||| || |||||||||||| ||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1313 AAA-TACGCCATAAAGTTTGTTCTTCATTTGTAACTTCTTATGCTACACTGTGCTCTTTC 1371
Query 1376 -tttCCC-CGGCTCATATGAGAGGAACATGATTTCAGCTAAAAGATCATTTAAATATTCA 1433
|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1372 ATTTCCCACGGCTCATATGAGATGAACATGATTTCAGCTAAAAGATCATTTAAATATTCA 1431
Query 1434 TAACCACAAGA 1444
|||||| ||||
Sbjct 1432 TAACCAAAAGA 1442
> AT3G63130.1 | Symbols: RANGAP1, ATRANGAP1 | RAN GTPase activating
protein 1 | chr3:23324621-23326913 FORWARD LENGTH=2040
Length=2040
Score = 69.4 bits (37), Expect = 9e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 1405 TTTCAGCTAAAAGATCATTTAAATATTCATAACCACAAGA 1444
||||||||||||||||||||||||||||||||||| ||||
Sbjct 2040 TTTCAGCTAAAAGATCATTTAAATATTCATAACCAAAAGA 2001
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5