BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486817
Length=2066
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63150.1 | Symbols: MIRO2, ATCBG | MIRO-related GTP-ase 2 | ... 3282 0.0
> AT3G63150.1 | Symbols: MIRO2, ATCBG | MIRO-related GTP-ase 2
| chr3:23328928-23332848 REVERSE LENGTH=2360
Length=2360
Score = 3282 bits (1777), Expect = 0.0
Identities = 1981/2077 (95%), Gaps = 23/2077 (1%)
Strand=Plus/Plus
Query 1 TGTCGGGTCAACCCGAATAGATATATGGAGCATCCATTCTCGGCCGGCAAAGTAACAAAC 60
||||||||||||||| |||||||||||||||||||| |||||||||| |||| ||
Sbjct 30 TGTCGGGTCAACCCGGTTAGATATATGGAGCATCCATCCTCGGCCGGC-AAGT----TAC 84
Query 61 ATCGTTGGT--A--GATCAATCTCATCTCCGAAACAATAACCGCCAATTTCC-T-CTCTC 114
||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 85 ATCGTTGGTAGATCGATCAATCTCATCTCCGAAACAATAACCGCCAATTTCCTTCCTCTC 144
Query 115 -AGTTTCCGACTCCGATGATGCTCGGTGGAAGGTCCTCTACCGGTA-GCCGTACAAGCCT 172
| | | ||||||||||||||||||||| |||||| |||| | |||||||||||||
Sbjct 145 TA-AAT-C-TCTCCGATGATGCTCGGTGGAAAGTCCTCCGCCGG-AGGCCGTACAAGCCT 200
Query 173 CAGAGTCGCCGTCGCTGGCGACAAAGGAACCGGTAAATCCAGCCTGATCTCTGCCGTCGC 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TAGAGTCGCCGTCGCTGGCGACAAAGGAACCGGTAAATCCAGCCTGATCTCTGCCGTCGC 260
Query 233 CTCCGAAACTTTCCCGGATAATGTCCCTCGCGTCCTTCCTCCGATTACTCTCCCCGCCGA 292
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 261 CTCCGAGACTTTCCCGGATAATGTCCCTCGCGTCCTTCCTCCGATTACTCTCCCTGCCGA 320
Query 293 CGCTTTCCCTGACTATATACCTATCACCATCGTCGATACTCCCTCAAGTATTGACAATAG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 321 CGCTTTCCCTGACTATATACCTATCACCATCGTCGATACTCCCTCAAGTATTGACAATCG 380
Query 353 GATTAAGCTCATTGAAGAATTCAGGAAGGCTGATGTGGTCATTCTCACCTATGCATGTGA 412
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 381 GATTAAGCTCATTGAAGAATTCAGGAAGGCTGATGTGGTCCTTCTCACTTATGCTTGTGA 440
Query 413 TCAGTCTGCGACTCTTGATCGCTTAAGTTCTTATTGGCTCCCTGAGCTCCGGCGTTTAGA 472
|||| || | |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 441 TCAGCCTTCAACTCTTGATCGCTTGAGTTCTTATTGGCTCCCTGAGCTCCGGCGTTTAGA 500
Query 473 GATCAAAGCTCCAGTAATTGTGGTGGGCTGCAAGCTTGATTTACGGGATGAACGATCTCC 532
||||||||| || || ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 501 GATCAAAGCACCTGTGATTGTGGTGGGCTGCAAGCTTGATTTACGTGATGAACGATCTCC 560
Query 533 CGCAAGACTAGAGGATATCATGGCACCAATCATGAAGGAGTACAGAGAGATAGAAACCTG 592
||| |||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||
Sbjct 561 CGCCAGACTAGAGGATATTATGTCACCAATCATGAAGGAGTACCGAGAGATAGAAACCTG 620
Query 593 TATAGAGTGTTCTGCTTTGACCCTTATACAGGCCCCTGATGTTTTCTATTTTGCATCAAA 652
|| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 621 CATTGAGTGTTCTGCATTGACCCTTATACAGGTCCCTGATGTTTTCTATTTTGCATCAAA 680
Query 653 AGCGGTCCTTCACCCAACATTTCCGTTGTTTGATCAAGAAAAACAATGTTTGAAACCTCG 712
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 681 AGCGGTCCTTCATCCAACATTTCCCTTGTTTGATCAAGAAAAACAATGTTTGAAACCCCG 740
Query 713 CCTCCGCAGGGCAGTACAAAGAATATTCAACCTCTGTGATCATGATTTGGATGGTGCCCT 772
||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 741 CCTCCGCAGGGCAGTTCAAAGAATATTCAACCTTTGTGATCATGATTTGGATGGTGCCCT 800
Query 773 TAATGACACAGAGTTGAATGATTTTCAGGTAAATTGTTTTGGTGCCCCACTTGACCCTGT 832
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 801 TAATGACGCAGAGTTGAATGATTTCCAGGTAAATTGTTTTGGTGCCCCACTTGACCCTGT 860
Query 833 TGAACTTATGGGAGTTAAGAAAGTGGTACAAGAAAGGCAACCAGATGGAGTAACTGATCT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 861 TGAACTTATGGGAGTTAAGAAAGTGGTACAAGAAAGGCAACCAGATGGAGTAACTGACCT 920
Query 893 TGGTCTTACACTTCCGGGTTTCCtttttcttttttCTCTATTCATCGAGAGAGGTCGCCC 952
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 921 TGGTCTTACACTTCCGGGTTTCCTTTTTCTTTTCTCTCTATTCATCGAGAGAGGTCGCCC 980
Query 953 TGAGACAGCATGGGCTATCCTACGGAAATATGGTTACAATGATTCTTTAGAACT-CAGCG 1011
||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
Sbjct 981 TGAGACAGCATGGGCTATCCTACGGAAATGTGGTTACAATGATTCTTTAGAACTCCA-TG 1039
Query 1012 CCGAGTTACTACCCGTTCCAGCAAAGCAGTCTCCTGATCAGAGCATCGAGCTAACAAACA 1071
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1040 CTGAGTTACTACCCGTTCCAGCTAAGCAGTCTCCTGATCAGAGCATCGAGCTAACAAACG 1099
Query 1072 AAGCCATGGACTTTCTCAGTGGAATCTTCCAGTTATATGACCTTGATAATGATGGAGCGT 1131
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AAGCTATGGACTTTCTGAGTGGAATCTTCCAGTTATATGACCTTGATAATGATGGAGCGT 1159
Query 1132 TACAGCCAGCTGAGCTAGATGATTTGTTTCAAACAGCTCCAGATAGTCCTTGGCTTGAGG 1191
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1160 TACAGCCAGCTGAGCTAGATGATTTATTTCAAACAGCTCCAGATAGTCCTTGGCTTGAGG 1219
Query 1192 CTCCTTATAAAGATA-CTGCAGAGAAAACGCCAGGCGGACGTTTGACAATCAATGGGTTT 1250
|||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1220 ATCCTTATAAAGA-AGCTGCAGAGAAAACGCCAGGCGGAAGTTTGACAATCAATGGGTTT 1278
Query 1251 CTGTCTGAGTGGGCTCTAATGACTCTTCTAGATCCTC-AAAAATGTTTGGCAAACCTGAT 1309
||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||
Sbjct 1279 CTGTCTGAGTGGGCTCTAATGACACTTCTAGATCCTCGAAAAA-GTTTGGCAAACCTGAC 1337
Query 1310 ATATATCGGTTATGGTCACGACCCAGCTTCAACATTTGCTGTTACTAGGAAAAGATCAGT 1369
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1338 ATATATCGGTTATGGTCACGACCCAGCTTCAACATTTTCTGTTACTAGGAAAAGATCAGT 1397
Query 1370 GGATCGTAAGAAGCAGCGAACAGAAAGGAATGTGTTTCAGTGCTTTGTATTTGGCCCTAA 1429
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 GGATCGTAAGAAACAGCGAACAGAAAGGAATGTGTTTCAGTGCTTTGTATTTGGCCCTAA 1457
Query 1430 AAAATCTGGAAAGTCTGCACTCCTTGATTCTTTCTTAGGAAGGAAATTTTCGAACAGCTA 1489
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1458 AAAATCTGGAAAGTCTGCACTCCTCGATTCTTTCTTAGGAAGGAAATTTTCAAACAGCTA 1517
Query 1490 TAAGGCAACAACGGGTGAACGATATGCAGCAAATGTCATTGATCAGCCTGGGGGTTCTAA 1549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1518 TAAGGCAACAATGGGTGAACGATATGCAGCAAATGTCATTGATCAGCCTGGGGGTTCTAA 1577
Query 1550 GAAAACCCTCATATTGCGGGAAATACCAGAGGACAGAGTTAAAAAGTTTCTGACAAATAA 1609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1578 GAAAACCCTCATATTGCGGGAAATACCAGAGGACAGAGTTAAAAAGTTTCTGACAAACAA 1637
Query 1610 GGAATTGTTGGCAGCATGTGATGTTGCTGTGGTTGTCTATGACAGTTCGGACGTATACTC 1669
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1638 GGAATCGTTGGCAGCATGTGATGTTGCTGTGGTTGTCTATGACAGTTCGGACGTATACTC 1697
Query 1670 ATGGAAAAAAGCGAGGGAAATACTGATGGAGGTAGCAAGGAGGGGAGAAGAGAGCGGTTA 1729
||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1698 ATGGAGAAAGGCGAGGGAAATACTGATGGAGGTAGCAAGGAGGGGAGAAGAGAGAGGTTA 1757
Query 1730 TGGGACCCCTTGTCTTCTTGTTGCGGCCAAAGATGATCTGGATCCATATCCAATGTCAGT 1789
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct 1758 CGGGACCCCTTGTCTTCTGGTTGCGGCCAAAGATGATTTGGATCCATATCCAATGTCAGT 1817
Query 1790 GCAAGAGTCTGATAGGGTTTGCATGGAATTGGGGATAGACATCGCTGTGTCATTAAGCAT 1849
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1818 GCAGGAGTCTGATAGGGTTTGCATGGAATTGGGGATAGACATCCCTGTGTCATTAAGCAT 1877
Query 1850 GAAACTTGGGGAGCCAAATAGTCTCTTCTCAAGAATCGTGAGTACAGCAGAGAACCCTCA 1909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1878 GAAACTTGGGGAGCCAAATAGTCTCTTCTCAAGAATCGTGAGTACAGCAGAGAACCCTCA 1937
Query 1910 CTTGAGCATTCCAGAGACAGAGTCAGGAAGAAGAAGCAAGAATATCCGCCAACTCGTGAA 1969
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1938 CATGAGCATTCCAGAGACAGAGTCAGGAAGAAGAAGCAGGAATATCCGCCAACTCGTGAA 1997
Query 1970 TAGCTCACTTCTATTTGTCTCAGTGGGTACAGCTGTTGGGTTTGCCGGATTGGCAGCTTA 2029
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1998 TAGCTCACTTCTATTTGTCTCAGTGGGTACAGCTGTTGGGTTTGCCGGATTAGCAGCTTA 2057
Query 2030 CCGTGCTTATTCCGCAAGGAAGAATGCTTGAAGATTT 2066
||||||||||||||||||||||||||||||||| |||
Sbjct 2058 CCGTGCTTATTCCGCAAGGAAGAATGCTTGAAGCTTT 2094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102409111800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5