BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486818

Length=416
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G63160.1 | Symbols:  | FUNCTIONS IN: molecular_function unkn...   361    4e-99


> AT3G63160.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown; 
INVOLVED IN: biological_process unknown; LOCATED IN: 
chloroplast outer membrane, thylakoid, chloroplast thylakoid 
membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 
21 plant structures; EXPRESSED DURING: 13 growth stages; BEST 
Arabidopsis thaliana protein match is: outer envelope membrane 
protein 7 (TAIR:AT3G52420.1); Has 26 Blast hits to 26 proteins 
in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; 
Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: 
NCBI BLink). | chr3:23333513-23334034 REVERSE LENGTH=522
Length=522

 Score =  361 bits (195),  Expect = 4e-99
 Identities = 222/235 (94%), Gaps = 2/235 (1%)
 Strand=Plus/Plus

Query  8    AAGAAGAAGAAGCAGCAATGGTGGAGAAGTCAGGAGGAGAAGTCCATTTCCCAAAACTGG  67
            ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct  36   AAGAAGAAGCAGCAGCAATGGTGGAGAAGTCAGGAGGAGAAGTCAATTTCCCAAAATTGG  95

Query  68   AGAAACCAACAGGCAAGAAACAGACAGCGACGGTTGTTGTGGGAGTGTTGGCAGTGGGAT  127
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  96   AGAAACCAACAGGCAAGAAACAGACAGCGACGGTTGTTGTGGGAGTGTTGGCGGTGGGAT  155

Query  128  TGTTGGCGATAGAGCTCGTGTTTAAGCCGTTGTTCAAGAAGCTGAGCTCATCAAAGGACA  187
             | ||||||||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct  156  GGCTGGCGATAGAGCTCGTGTTTAAGCCATTGTTCAAGAAGCTGAGCTCCTCCAAGGACA  215

Query  188  AATCCGATTCCGACGATGCCACCGCTCC-TCCCCCGTCGGTCCCCTGAATATGGT  241
            |||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||
Sbjct  216  AATCCGATTCCGACGATGCCACCG-TCCCTCCCCCGTCGGGCGCCTGAATATGGT  269


 Score =  137 bits (74),  Expect = 7e-32
 Identities = 96/106 (91%), Gaps = 3/106 (3%)
 Strand=Plus/Plus

Query  311  CCCTTTTAAATAAAATCCCGACAGGGAATACTAAAATCAATGAGATACGACGATGTAATT  370
            |||||| |||||||||||||||| || ||| |||||||||||||| |  |||||||||||
Sbjct  407  CCCTTTCAAATAAAATCCCGACAAGG-ATAATAAAATCAATGAGAGA-TACGATGTAATT  464

Query  371  GG-TTTTATTTTCCTGATTGTCTTGGGTTTTGTTGGTAATAAATAA  415
            || |||||||||| || |||||||||||||||||||||||||||||
Sbjct  465  GGTTTTTATTTTCTTGTTTGTCTTGGGTTTTGTTGGTAATAAATAA  510



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19704957608


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5