BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486819
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63170.1 | Symbols: | Chalcone-flavanone isomerase family p... 1360 0.0
> AT3G63170.1 | Symbols: | Chalcone-flavanone isomerase family
protein | chr3:23334352-23336109 FORWARD LENGTH=1279
Length=1279
Score = 1360 bits (736), Expect = 0.0
Identities = 941/1031 (91%), Gaps = 50/1031 (5%)
Strand=Plus/Plus
Query 154 AAGAGTGTAACAAAC-AACTaaaaaa---aGTTAACT--T--ACAACACTCACACC--AA 203
||||||||||||||| ||| |||||| ||| |||| | |||||||||||||| ||
Sbjct 257 AAGAGTGTAACAAACAAAC-AAAAAAGTTAGTGAACTACTAAACAACACTCACACCAAAA 315
Query 204 A-A-GACGATGGTTTCGTTTCGCTTCCCTTTCTCGTTTTCTCAGCCCCCGCGTGCCACGT 261
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 316 AGACGACGATGGTTTCGTTTCGCTTCCCTTTCTCGTTTTCTCAGCCCCCGCGTGCCACCA 375
Query 262 CGTCATTCTCCGGTTTCTCCATTTCCGCTGTCGCTGTCTCCGTCA-C-----CGCTG--G 313
||||||||||||| ||||||||||||||||||||||||||||||| | ||| | |
Sbjct 376 CGTCATTCTCCGGATTCTCCATTTCCGCTGTCGCTGTCTCCGTCACCGTTGGCGCCGCAG 435
Query 314 -CGCCGGAGCTGCGATCGCGGCGTCGCGGAATCCCAATCATCCAATTGTGGAGTGGGCCT 372
|||||||||||||||||||||||| |||||||||| ||||| ||| | ||||||||||
Sbjct 436 CCGCCGGAGCTGCGATCGCGGCGTCCCGGAATCCCAGCCATCCGATTCTAGAGTGGGCCT 495
Query 373 TATCCTCTCACCGCTCGTCTCTGTT-ACCATGGGGATCTATAACTCTAGCCGACTCTACC 431
| ||||||||||| |||||||| || ||||||||||||||||||||||| | | |
Sbjct 496 TCTCCTCTCACCGTTCGTCTCT-TTCACCATGGGGATCTATAACTCTAG-C-A---GA-- 547
Query 432 CCCGAATCCGTTGTGGAACCTAAGACAGGTTTCTCGTTTCCCGCTTCAATCGGAGATTCG 491
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 548 --CGAATCCGTTGTCGAACCTAAGACCGGTTTCTCGTTTCCCGCTTCAATCGGAGATTCC 605
Query 492 CGGCGATTACTCGGCGTCGGCCTGAGGAAGAAGAGCTTACTGGGATTGAAGAACATCGAT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 CGGCGATTACTCGGCGTCGGCCTGAGGAAGAAGAGCTTACTGGGATTGAAGAACATCGAT 665
Query 552 GTCTACGCCTTCGGCGTGTATGCTGATTGTGATGATGTGAAGAAACTTGTGGGAGACAAG 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 666 GTCTACGCCTTCGGCGTGTATGCTGATTGTGATGATGTGAAGAAACTTGTGGGAGACAAG 725
Query 612 TACGCAAATCTCCCAGCTTCGGAGATCAGGGGAAACAAGGCATTCATGGATGATCTCATG 671
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 726 TACGCAAATCTTCCAGCTTCAGAGATCAGGGGAAACAAGTCATTCATGGATGATCTCATG 785
Query 672 GAAGCCGATATTAAGATGACTATAAGGTTGCAGATTGTCTACGGCAAACTCAACATCCGA 731
|||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||
Sbjct 786 GAAGCCGATATTAAGATGACGATAAGGCTACAGATTGTCTACGGCAAACTCAACATCCGA 845
Query 732 TCCGTGCGCAATGCTTTTCAAGAATCTGTTGGAAACAGACTCAACAAGTTCGGTGGCTCA 791
|||||||| |||||||| ||||| |||||||||||||||||||| |||||||||||||||
Sbjct 846 TCCGTGCGTAATGCTTTCCAAGAGTCTGTTGGAAACAGACTCAAGAAGTTCGGTGGCTCA 905
Query 792 GACAACGACGAGTTGCTTCAAAGCTTCACTAGCCTCTTCAAAGATGAGTATAAGATTCCA 851
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 GACAATGACGAGTTGCTTCAAAGCTTCACTAGCCTCTTCAAAGATGAGTATAAGATTCCA 965
Query 852 AGAAACTCCACCATTGATTTGACAAAAGAACCAGGTCATGTACTCTGCGTTGCAATTGAG 911
||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||||
Sbjct 966 AGAAACTCCACCATTGATTTGACAAAAGATCCGGGCCATGTACTCAGCGTTGCAATTGAG 1025
Query 912 GGAAACCACGTGGGGAGTGTGCAGAGCCAACTCTTGTGTAGATCAATCTTAGACTTGTAC 971
|| ||||| || ||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1026 GGGAACCATGTCGGGAGTGTGAAGAGCCATCTCTTGTGTAGATCAATCTTAGACTTGTAC 1085
Query 972 ATTGGTGAAGAACCGTTTGATAAGAATGCAAGAGAAGATTTTCTAGACAATGCAGCTTCT 1031
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 ATTGGTGAAGAACCGTTTGATAAGAATGCAAGAGAAGATTTTCTAGACAATGCAGCTTCT 1145
Query 1032 CTAGCCTTCGACAACTAGTT-AG--CAA--T----CTTTCTT--------AACGGATTCT 1074
|||||||||||||||||||| | ||| | ||||||| ||||||||||
Sbjct 1146 CTAGCCTTCGACAACTAGTTCACAACAAAATGTTGCTTTCTTTCTTTCTTAACGGATTCT 1205
Query 1075 CTATATATACGGCATAATGTTGAGGAATGTATTTGAAATAAATTGCTTGGGGAAATGGGG 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1206 CTATATATACGGCATAATGTTGAGGAATGTATTTGAAATAAATTGCTTGGGGAATTGGGT 1265
Query 1135 TTTGTTAGTCT 1145
|||||||||||
Sbjct 1266 TTTGTTAGTCT 1276
Score = 241 bits (130), Expect = 1e-62
Identities = 152/162 (94%), Gaps = 3/162 (2%)
Strand=Plus/Plus
Query 1 AAAATGAGCAAAAGAAAGCCCAAATAGATCCTGTCCGGAACATTAAAACGAGGAAAGCCC 60
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 73 AAAATGAGCAAAAGAAAGCCCAAATAGATCCTGTCCGGAATAGTAAAACGAGGAAAGCCC 132
Query 61 AAATAGAGCCA-GTCCGGAAGAGTCGAGGTCACGTGCAATACAGGTGTCAATTAAAGCAG 119
||| | || || |||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 133 AAACATAG-CATGTCCGGAAGAATCGAGGTCACGTGCAATACACGTGTCAATTAAAGCAG 191
Query 120 GAGTTATTGTCGCTGAATCATATCAATGGCGTGTAAGAGTGT 161
|||||||||||||||||||||||||||||||||| | |||||
Sbjct 192 GAGTTATTGTCGCTGAATCATATCAATGGCGTGTGA-AGTGT 232
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5