BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486827
Length=2478
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63240.1 | Symbols: | DNAse I-like superfamily protein | ch... 2887 0.0
> AT3G63240.1 | Symbols: | DNAse I-like superfamily protein |
chr3:23363872-23367592 REVERSE LENGTH=2799
Length=2799
Score = 2887 bits (1563), Expect = 0.0
Identities = 1760/1852 (95%), Gaps = 26/1852 (1%)
Strand=Plus/Plus
Query 468 AATAGTGAATCAGAGATCTAGCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 527
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 670 AATTGTGAATCAGAGATCTATCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 729
Query 528 GCCTCAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 587
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 730 ACCTCAAGAAAAGCAAGCTGTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 789
Query 588 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGAGGAGATT 647
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 790 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGTGGAGATT 849
Query 648 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCACAAAAGCAAAACTGAGA 707
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 850 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCGTAAAAGCAAAACTGAGA 909
Query 708 CTCCGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGACGTCGATCCACCAC 767
||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 910 CTCGGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGATGTCGATCCACCGC 969
Query 768 TTGATCATCATAGGGTTTTTACTGCTACATGGAATGTCGCCGGAAAATCTCCGCCGAGTT 827
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 970 TTGATCATCTTAGGGTTTTTACTGCCACATGGAATGTCGCCGGCAAATCTCCGCCGAGTT 1029
Query 828 ATTTAAATCTCGATGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 887
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 ATTTAAATCTCGACGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 1089
Query 888 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 1149
Query 948 CCAGGAAATGGGTCTCTCTCATCCGGAGAACCTTGAACAGTCTTCCCGGCGGAAGCTGCC 1007
||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||
Sbjct 1150 CCAGGAAATGGGTCTCTCTCATCCGAAGAACCCTAAACAGCCTTCCCGGCGGAAGCTGCC 1209
Query 1008 -GTACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTCGAAGGCGAC 1066
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1210 AG-ACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTTGAAGGCGAC 1268
Query 1067 TCAGCCGCTGGGGCTAACTCGTTTTTCTACCATCGGAGCAGGAGCATGAGGATGGAC-CT 1125
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1269 TCAGCCGCTGGTGCTAACTCGTTATTCTACCATCGGAGCAGGAGCATGAGGATGGACGC- 1327
Query 1126 GTCTGCATCATCCCTGCCACCGCAGTTTGACCGGAGATTCAGCGTCTGTGACCGTTTCAT 1185
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 1328 GTCTGCATCATCCCTGCCACAGCAGTTTGACCGCAGATTCAGCGTCTGTGACCGTTTCAT 1387
Query 1186 GCTGGGCGACAGACCTGACGACTTCTACGACCAGAGCTTCAGGTATTGCTCCTCTGAAGA 1245
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1388 GCTGGGCGACACACCTGACGACTTCTACGACCAGAGCTTTAGGTATTGCTCCTCTGAAGA 1447
Query 1246 TGAG-C--CAGATTCTCCTTCTCATGATCACTATTCCCCTGTCTCGAGGACTGGATCCTT 1302
||| | |||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1448 CGAGCCAGCAGATTCTCCTTGTCATGATCACTATTCCCCTGTCTCGAGGACTGGTTCCTT 1507
Query 1303 TGTGGC--A-GAC---GAC------AGAGATAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1350
|||||| | ||| ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1508 TGTGGCAGACGACAGAGACAAAGGAAGAGACAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1567
Query 1351 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1568 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1627
Query 1411 GAACCTCAAAGTGTCTTGTGTTGGCAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1470
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1628 CAACCTCAAAGTGTCTTGCGTTGGGAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1687
Query 1471 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1747
Query 1531 GTCTGGTCAGAAAGAAGGCGACGAGCTAAGAAGAAACTCTGATGTTTTGGAGATTCTGAG 1590
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1748 GTCTGGTCAGAAAGAAGGAGACGAGCTGAGAAGAAACTCTGATGTTTTGGAGATTCTAAG 1807
Query 1591 GAAAACCAGATTTCCTAGAGTGAACAATGCAGGCGACGACAAGTCTCCTCAGACGATTTT 1650
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1808 GAAAACCAGATTCCCTAGAGTGAACAATGCCGGCGACGACAAGTCTCCTCAGATGATTTC 1867
Query 1651 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTATCG 1710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1868 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTACCG 1927
Query 1711 GTCTGCAAAAGCTCTTGTCGAGATGAGAAATTGGAGTGCCTTGCTTGAGAAAGACCAGCT 1770
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1928 GTCTGCAAAAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGCT 1987
Query 1771 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAACGAAGGGACTATATATTT 1830
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1988 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGGACTATATATTT 2047
Query 1831 TCCACCCACTTACAAATACTCTAACAATTCAGATATATATGCTGGCGATGATCGGCTTCC 1890
|||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2048 TCCACCAACTTACAAATACTCTAACAATTCAGATATTTATGCTGGCGATGATCGCCTTCC 2107
Query 1891 CAAGGCCAAGAGACGGACTCCAGCATGGTGTGATCGCATACTCTGGTACGGGAGTGGTAT 1950
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2108 CAAGGCCAAGAGACGCACTCCAGCATGGTGTGATCGCATACTCTGGCACGGGAGTGGTAT 2167
Query 1951 TAATCAGCTGTCATATGTTCGCGGGGAATCAAGATTCTCTGATCACAGACCAGTCTACAG 2010
| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2168 CAGTCAGCTGTCATATGTTCGCGGGGAATCAAGGTTCTCTGATCACAGACCAGTCTACAG 2227
Query 2011 TTTGTTTTCAGTAGAGATTGAATCGGTATGTAGAAACCGTATCAAGAAAAGCTCCAGTTA 2070
|||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2228 TTTGTTCTCAGTAGAGATTGAATCGGCATATAGAAACCGTATCAAGAAAAGCTCCAGTTA 2287
Query 2071 CACCAGCTCTAGGATAGAAGTTGAGGAACTTCTTCCTCAACGGTATGGATATTCTGAGCT 2130
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2288 CACCAGCTCTAGGATCGAAGTTGAGGAACTTCTTCCTCAACGCTATGGATATTCTGAGCT 2347
Query 2131 TAACCCGTACT---GATTCATCATCGGTCCTGAATCCATTTGAAGACAGATCCCGAGGGA 2187
||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| |||||
Sbjct 2348 TAACCCGTACTAACGATTCATCATCGGTCCTGAATCCGTTTGTAGACAGACCCCAAGGGA 2407
Query 2188 GGATTCAATGTTTCTAAAGCCTGAACAAAAAGAAAACTGGGGTTGGAGATATGTGAATCA 2247
||||||||| |||||||||||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 2408 GGATTCAATATTTCTAAAGCCTGAACAAAA-GAAAAATGGGGTTGGAGATTTGTGAATCA 2466
Query 2248 -AG--GAGTCATTGAAAAGTCAGATCTTGGTCAAGATCTCTGGTGCCTAAGC 2296
|| ||||||| |||| ||||||| ||||||||||||||||||||||||||
Sbjct 2467 TAGAAGAGTCATGGAAAGGTCAGATATTGGTCAAGATCTCTGGTGCCTAAGC 2518
Score = 176 bits (95), Expect = 9e-43
Identities = 99/101 (98%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 261 AAGAGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 347 AAGAGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 406
Query 321 TTGTCTTCCTTTTGCCTCTTCTTGGATTTGGCGTTCAAAGA 361
||||||| |||||||| ||||||||||||||||||||||||
Sbjct 407 TTGTCTTTCTTTTGCCCCTTCTTGGATTTGGCGTTCAAAGA 447
Score = 130 bits (70), Expect = 7e-29
Identities = 145/176 (82%), Gaps = 26/176 (15%)
Strand=Plus/Plus
Query 2328 AGT-ATATCTTTAGGATTATAGAGAAGTGACCAttttttttGGTTT-----TCA--A--- 2376
||| ||||||||||||||||||||||||||||| |||||||||||| || |
Sbjct 2598 AGTAATATCTTTAGGATTATAGAGAAGTGACCAGTTTTTTTGGTTTAAAACCCATTAGTT 2657
Query 2377 A-----CCATTAG-TTGTAGCATTCGTCAAACTTGTG--TA----TA-G-TTTGTAAATA 2422
| |||| || |||||| |||||||||||||||| || || | ||||||||||
Sbjct 2658 ATCTCTCCATAAGATTGTAGGATTCGTCAAACTTGTGTATAGTTGTATGCTTTGTAAATA 2717
Query 2423 TAATGGATTCTTTGTAAGG-ACCAACGGGTTTAGATTGGAAAGAGCAGAGTTAAAA 2477
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 2718 TAATGGATTCTTTGTAAGGGACCAATGGGTTTAGATTGGAAAGAGCAGAGTTAAAA 2773
Score = 65.8 bits (35), Expect = 2e-09
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 2297 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2331
|||||||||||||||||||||||||||||||||||
Sbjct 2537 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122959177293
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5