BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486827 Length=2478 Score E Sequences producing significant alignments: (Bits) Value AT3G63240.1 | Symbols: | DNAse I-like superfamily protein | ch... 2887 0.0 > AT3G63240.1 | Symbols: | DNAse I-like superfamily protein | chr3:23363872-23367592 REVERSE LENGTH=2799 Length=2799 Score = 2887 bits (1563), Expect = 0.0 Identities = 1760/1852 (95%), Gaps = 26/1852 (1%) Strand=Plus/Plus Query 468 AATAGTGAATCAGAGATCTAGCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 527 ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 670 AATTGTGAATCAGAGATCTATCCATCTCTGTATGAAGCTGAAGAACAATGGGTGATGGTA 729 Query 528 GCCTCAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 587 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 730 ACCTCAAGAAAAGCAAGCTGTCATGGCCCAAAACGTTGGTCAAGAAATGGCTCAACATCA 789 Query 588 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGAGGAGATT 647 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 790 AGAGCAAATCAGAAGATTTTCACGCAGACGACTTGGACAGAGGTGAAGGTGGTGGAGATT 849 Query 648 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCACAAAAGCAAAACTGAGA 707 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 850 GGAGGAACAATGTCATTGAAAGAGAGGAAGCATGCTCTGTCCGTAAAAGCAAAACTGAGA 909 Query 708 CTCCGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGACGTCGATCCACCAC 767 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 910 CTCGGAGCAAAAGGAACAGCGGAAGAGCCAGACGAAACAAACTCGATGTCGATCCACCGC 969 Query 768 TTGATCATCATAGGGTTTTTACTGCTACATGGAATGTCGCCGGAAAATCTCCGCCGAGTT 827 ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 970 TTGATCATCTTAGGGTTTTTACTGCCACATGGAATGTCGCCGGCAAATCTCCGCCGAGTT 1029 Query 828 ATTTAAATCTCGATGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 887 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1030 ATTTAAATCTCGACGATTGGCTTCACACTTCTCCTCCTTCCGACATTTACGTTCTTGGCT 1089 Query 888 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 947 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1090 TCCAAGAGATCGTTCCTTTGAACGCCGGCAACGTTTTAGGCACCGAGGACAACGGACCCG 1149 Query 948 CCAGGAAATGGGTCTCTCTCATCCGGAGAACCTTGAACAGTCTTCCCGGCGGAAGCTGCC 1007 ||||||||||||||||||||||||| |||||| | ||||| ||||||||||||||||||| Sbjct 1150 CCAGGAAATGGGTCTCTCTCATCCGAAGAACCCTAAACAGCCTTCCCGGCGGAAGCTGCC 1209 Query 1008 -GTACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTCGAAGGCGAC 1066 | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1210 AG-ACTCCTTCTCCTGTTCCCCACCCGGTCGCCGAGCTCGACTCTGACTTTGAAGGCGAC 1268 Query 1067 TCAGCCGCTGGGGCTAACTCGTTTTTCTACCATCGGAGCAGGAGCATGAGGATGGAC-CT 1125 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 1269 TCAGCCGCTGGTGCTAACTCGTTATTCTACCATCGGAGCAGGAGCATGAGGATGGACGC- 1327 Query 1126 GTCTGCATCATCCCTGCCACCGCAGTTTGACCGGAGATTCAGCGTCTGTGACCGTTTCAT 1185 |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| Sbjct 1328 GTCTGCATCATCCCTGCCACAGCAGTTTGACCGCAGATTCAGCGTCTGTGACCGTTTCAT 1387 Query 1186 GCTGGGCGACAGACCTGACGACTTCTACGACCAGAGCTTCAGGTATTGCTCCTCTGAAGA 1245 ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1388 GCTGGGCGACACACCTGACGACTTCTACGACCAGAGCTTTAGGTATTGCTCCTCTGAAGA 1447 Query 1246 TGAG-C--CAGATTCTCCTTCTCATGATCACTATTCCCCTGTCTCGAGGACTGGATCCTT 1302 ||| | |||||||||||| ||||||||||||||||||||||||||||||||| ||||| Sbjct 1448 CGAGCCAGCAGATTCTCCTTGTCATGATCACTATTCCCCTGTCTCGAGGACTGGTTCCTT 1507 Query 1303 TGTGGC--A-GAC---GAC------AGAGATAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1350 |||||| | ||| ||| ||||| ||||||||||||||||||||||||||||| Sbjct 1508 TGTGGCAGACGACAGAGACAAAGGAAGAGACAAGTCTAAGTACTGTTTAGTGGCCAGTAA 1567 Query 1351 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1568 GCAGATGGTTGGGATATTCTTAACCGTTTGGGTCAAGAGTGATCTAAGGGACAGTGTCAA 1627 Query 1411 GAACCTCAAAGTGTCTTGTGTTGGCAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1470 ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 1628 CAACCTCAAAGTGTCTTGCGTTGGGAGAGGCTTGATGGGTTATCTTGGAAACAAGGGCTC 1687 Query 1471 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1530 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1688 CATTTCGATCAGCATGTCCGTTCACCAGACAAGCTTCTGCTTTGTCTGCAGCCACTTGAC 1747 Query 1531 GTCTGGTCAGAAAGAAGGCGACGAGCTAAGAAGAAACTCTGATGTTTTGGAGATTCTGAG 1590 |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| || Sbjct 1748 GTCTGGTCAGAAAGAAGGAGACGAGCTGAGAAGAAACTCTGATGTTTTGGAGATTCTAAG 1807 Query 1591 GAAAACCAGATTTCCTAGAGTGAACAATGCAGGCGACGACAAGTCTCCTCAGACGATTTT 1650 |||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1808 GAAAACCAGATTCCCTAGAGTGAACAATGCCGGCGACGACAAGTCTCCTCAGATGATTTC 1867 Query 1651 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTATCG 1710 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1868 AGAACACGATCGGGTAATCTGGCTTGGAGACTTGAACTACCGTATAGCTCTTTCTTACCG 1927 Query 1711 GTCTGCAAAAGCTCTTGTCGAGATGAGAAATTGGAGTGCCTTGCTTGAGAAAGACCAGCT 1770 |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| Sbjct 1928 GTCTGCAAAAGCTCTTGTCGAGATGAGAGATTGGAGGGCCTTGCTTGAGAAAGACCAGCT 1987 Query 1771 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAACGAAGGGACTATATATTT 1830 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1988 ACGGATAGAACAACGAAAAGGCTGTGTCTTTGAAGGATGGAAGGAAGGGACTATATATTT 2047 Query 1831 TCCACCCACTTACAAATACTCTAACAATTCAGATATATATGCTGGCGATGATCGGCTTCC 1890 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 2048 TCCACCAACTTACAAATACTCTAACAATTCAGATATTTATGCTGGCGATGATCGCCTTCC 2107 Query 1891 CAAGGCCAAGAGACGGACTCCAGCATGGTGTGATCGCATACTCTGGTACGGGAGTGGTAT 1950 ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 2108 CAAGGCCAAGAGACGCACTCCAGCATGGTGTGATCGCATACTCTGGCACGGGAGTGGTAT 2167 Query 1951 TAATCAGCTGTCATATGTTCGCGGGGAATCAAGATTCTCTGATCACAGACCAGTCTACAG 2010 | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2168 CAGTCAGCTGTCATATGTTCGCGGGGAATCAAGGTTCTCTGATCACAGACCAGTCTACAG 2227 Query 2011 TTTGTTTTCAGTAGAGATTGAATCGGTATGTAGAAACCGTATCAAGAAAAGCTCCAGTTA 2070 |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 2228 TTTGTTCTCAGTAGAGATTGAATCGGCATATAGAAACCGTATCAAGAAAAGCTCCAGTTA 2287 Query 2071 CACCAGCTCTAGGATAGAAGTTGAGGAACTTCTTCCTCAACGGTATGGATATTCTGAGCT 2130 ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2288 CACCAGCTCTAGGATCGAAGTTGAGGAACTTCTTCCTCAACGCTATGGATATTCTGAGCT 2347 Query 2131 TAACCCGTACT---GATTCATCATCGGTCCTGAATCCATTTGAAGACAGATCCCGAGGGA 2187 ||||||||||| ||||||||||||||||||||||| |||| ||||||| ||| ||||| Sbjct 2348 TAACCCGTACTAACGATTCATCATCGGTCCTGAATCCGTTTGTAGACAGACCCCAAGGGA 2407 Query 2188 GGATTCAATGTTTCTAAAGCCTGAACAAAAAGAAAACTGGGGTTGGAGATATGTGAATCA 2247 ||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 2408 GGATTCAATATTTCTAAAGCCTGAACAAAA-GAAAAATGGGGTTGGAGATTTGTGAATCA 2466 Query 2248 -AG--GAGTCATTGAAAAGTCAGATCTTGGTCAAGATCTCTGGTGCCTAAGC 2296 || ||||||| |||| ||||||| |||||||||||||||||||||||||| Sbjct 2467 TAGAAGAGTCATGGAAAGGTCAGATATTGGTCAAGATCTCTGGTGCCTAAGC 2518 Score = 176 bits (95), Expect = 9e-43 Identities = 99/101 (98%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 261 AAGAGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 347 AAGAGGAAAATCCGGGCTGTACCCGAATACCCATCTCTCTGAACTCGGGTTCCAAAGTTG 406 Query 321 TTGTCTTCCTTTTGCCTCTTCTTGGATTTGGCGTTCAAAGA 361 ||||||| |||||||| |||||||||||||||||||||||| Sbjct 407 TTGTCTTTCTTTTGCCCCTTCTTGGATTTGGCGTTCAAAGA 447 Score = 130 bits (70), Expect = 7e-29 Identities = 145/176 (82%), Gaps = 26/176 (15%) Strand=Plus/Plus Query 2328 AGT-ATATCTTTAGGATTATAGAGAAGTGACCAttttttttGGTTT-----TCA--A--- 2376 ||| ||||||||||||||||||||||||||||| |||||||||||| || | Sbjct 2598 AGTAATATCTTTAGGATTATAGAGAAGTGACCAGTTTTTTTGGTTTAAAACCCATTAGTT 2657 Query 2377 A-----CCATTAG-TTGTAGCATTCGTCAAACTTGTG--TA----TA-G-TTTGTAAATA 2422 | |||| || |||||| |||||||||||||||| || || | |||||||||| Sbjct 2658 ATCTCTCCATAAGATTGTAGGATTCGTCAAACTTGTGTATAGTTGTATGCTTTGTAAATA 2717 Query 2423 TAATGGATTCTTTGTAAGG-ACCAACGGGTTTAGATTGGAAAGAGCAGAGTTAAAA 2477 ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| Sbjct 2718 TAATGGATTCTTTGTAAGGGACCAATGGGTTTAGATTGGAAAGAGCAGAGTTAAAA 2773 Score = 65.8 bits (35), Expect = 2e-09 Identities = 35/35 (100%), Gaps = 0/35 (0%) Strand=Plus/Plus Query 2297 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2331 ||||||||||||||||||||||||||||||||||| Sbjct 2537 ACAGGAGAAGATTCGAGTGAAAACAGAAGAGAGTA 2571 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 122959177293 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5