BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486829
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine meth... 1731 0.0
> AT3G63250.1 | Symbols: HMT-2, ATHMT-2, HMT2 | homocysteine methyltransferase
2 | chr3:23370308-23372682 REVERSE LENGTH=1364
Length=1364
Score = 1731 bits (937), Expect = 0.0
Identities = 1003/1036 (97%), Gaps = 0/1036 (0%)
Strand=Plus/Plus
Query 21 AAGATGACCGGAAGCTCTTTTTGCTCGATGAAAGATTACCTGAAGCAGACAGGCGGCTTT 80
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 93 AAGATGACCGGAAACTCTTTTAACTCGATGAAAGATTTCCTGAAGCAGACAGGCGGCTAT 152
Query 81 GCGGTGATAGACGGAGGGCTTGCAACGGAGTTCGAGAGACATGGAGCAGATCTCAACGAT 140
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 GCGGTAATAGACGGAGGGCTTGCAACGGAGTTCGAGAGACATGGAGCAGATCTCAACGAT 212
Query 141 CCTCTCTGGAGCGCCAAATGCCTCCTCACTTCTCCTCACCTCATTCACACCGTGCATCTC 200
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 213 CCTCTCTGGAGCGCCAAATGCCTTGTCACCTCTCCTCACCTCATTCACACCGTGCATCTC 272
Query 201 GATTACCTTGAAGCTGGTGCTGATATCATCTCCAGCGCTTCTTATCAGGCCACGATTCAG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 GATTACCTTGAAGCTGGTGCTGATATCATCTCCAGCGCTTCTTATCAGGCCACGATTCAG 332
Query 261 GGGTTTGAAGCAAAGGGATTTTCAAGAGAAAATAGTGAATCTTTGCTTAGAAAGAGCGTA 320
||||||||||||||||||||||| |||||| | || ||||||||||||| ||||||||||
Sbjct 333 GGGTTTGAAGCAAAGGGATTTTCTAGAGAAGAGAGCGAATCTTTGCTTAAAAAGAGCGTA 392
Query 321 GAAATAGCTTGTGAAGCTCGGAACACGTATTATGACAAATGTGGAACTAGCTCTTCCATG 380
|||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 393 GAAATAGCGACTGAAGCTCGGAACTCGTATTATGACAAATGCGGAACTAGCTCTTCCATG 452
Query 381 GATGATAAGATTCTTAAAAAGCGGCCTATATTAGTTGCAGCATCAGTTGGTAGCTATGGT 440
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 453 GATGATAAGATTCTCAAAAAGCGCCCTATATTAGTTGCAGCATCAGTTGGTAGCTACGGT 512
Query 441 GCATACTTGGCTGATGGGTCTGAATACAGTGGAGTCTATGGTGATTCGATCACGCTGGAA 500
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 513 GCATACTTGGCTGATGGGTCTGAATACAGTGGAATCTATGGTGATTCGATCACGCTGGAA 572
Query 501 AAGCTGAAGGATTTTCACCGCAGACGACTCCAAGTTCTGGCGGAATCTGGTGCTGATTTA 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AAGCTGAAGGATTTTCACCGCAGACGACTCCAAGTTCTGGCGGAATCTGGTGCTGATTTA 632
Query 561 ATAGCATTTGAGACCATTCCAAACAAGATAGAGGCTCAGGCATTTGCTGAGCTGTTAGAG 620
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 633 ATAGCATTTGAGACCATTCCAAACAAGATAGAGGCTCAGGCATTTGCTGATCTATTAGAA 692
Query 621 GAGGGAGATGTCAAGATTCCTGGGTGGTTTTCATTCAACTCAAAGGATGGCGTAAACGTG 680
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GAGGGAGATGTGAAGATTCCTGGGTGGTTTTCATTCAACTCAAAGGATGGCGTAAACGTG 752
Query 681 GTTAGCGGGGATTCCATCAAGGAGTGTATCTCCATAGCTGAAAATTGTGAGAAAGTAGTG 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 GTTAGCGGGGATTCCATCAAGGAGTGTATCTCCATAGCTGAAAATTGTGAGAAAGTAGTG 812
Query 741 GCGGTTGGAATCAACTGTACCCCTCCAAGATTCATCGAGGGGCTAGTTTTGGAGATAGAA 800
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 813 GCGGTTGGAATCAACTGTACCCCTCCAAGATTCATAGAGGGGCTAGTTTTGGAGATAGAA 872
Query 801 AAGGTGACAAGCAAGCCCATACTAGTGTACCCAAACAGCGGAGAAAGCTATGATGCTGAT 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AAGGTGACAAGCAAGCCCATACTAGTGTACCCAAACAGCGGAGAAAGCTATGATGCTGAT 932
Query 861 CGGAAGGAGTGGGTGGAAAACACAGGAGTTGGGGATGAAGACTTTGTGTCATACGTAGAG 920
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 933 CGGAAGGAGTGGGTGGAAAACACCGGAGTTGGGGATGAAGACTTTGTATCATACGTAGAG 992
Query 921 AAATGGATGGATGCAGGAGTGTCTCTCCTGGGAGGTTGCTGCCGCACAACACCAACCACC 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 993 AAATGGATGGATGCAGGAGTGTCTCTCCTGGGAGGTTGCTGCCGCACAACACCAACCACC 1052
Query 981 ATCAGAGCCATCCACAAGAGACTTGTCAACCGCAGATCTCATTAGCTTTCAACTTCACTC 1040
||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||
Sbjct 1053 ATCAGAGCCATCCACAAGAGACTCGTCAACCGCAGATCTCTTTAGCATTCAACTTCACTC 1112
Query 1041 TCTTCTATGAATCTCT 1056
||||||||||||||||
Sbjct 1113 TCTTCTATGAATCTCT 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5