BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486830
Length=1461
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63260.1 | Symbols: ATMRK1 | Protein kinase superfamily prot... 2061 0.0
> AT3G63260.1 | Symbols: ATMRK1 | Protein kinase superfamily protein
| chr3:23372881-23375007 REVERSE LENGTH=1645
Length=1645
Score = 2061 bits (1116), Expect = 0.0
Identities = 1270/1340 (95%), Gaps = 27/1340 (2%)
Strand=Plus/Plus
Query 141 GAGAGAAACCAATGGCCTCTGGCGGCGGGGAGGCGGATAAATCACTTGAAATCGGGTCCG 200
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 250 GAGAGAAATCAATGGCCTCTGGCGGCGGAGAGGCGGATAAATCACTTGAAATCGGGTCCG 309
Query 201 GGTCCGCCGATCCCAAATTAGGCGGTGCTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 260
|| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 310 GGACCGCGGATCCCAAAATAGGCGGTACTGGGAGCAGGAGCGCCGGAGAAGAACGATACT 369
Query 261 TCAGGGCCGATAAACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTAGTA 320
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 TCAGGGCAGATACACTGGATTTCAGTAAATGGGATTTGCATATGGGTCAAACCTCTACTA 429
Query 321 ACAGCGTCGTCACCAATAATTCCGCTTCGACGAGCGCTCCGGCACCGGCGATGCAGGAAT 380
||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 430 GCAGCGTCCTCACC---AATTCCGCTTCCACGAGCGCTCCCGCACCGGCGATGCAGGAAT 486
Query 381 GGGAGATTGACCTCTCCAAACTCGATATGAGGCACGTCCTCGCTCACGGCACTTATGGCA 440
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||
Sbjct 487 GGGAGATTGACCTCTCCAAACTCGATATGAAGCACGTCCTCGCTCACGGTACTTACGGCA 546
Query 441 CTGTCTACCGCGGTGTCTACGCCGGCCAAGACGTCGCAGTCAAAGTGTTAGATTGGGGAG 500
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 547 CTGTCTACCGCGGTGTCTACGCCGGCCAAGAAGTCGCAGTGAAAGTGTTAGATTGGGGAG 606
Query 501 AAGATGGTTACGCCAC-CGCAGCTGAAACTGCAGCTCTGCGTACTTCCTTCGAGCAAGAG 559
|||||||||||||||| | ||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 607 AAGATGGTTACGCCACAC-CAGCTGAAACTACAGCTCTCCGTGCTTCCTTCGAGCAAGAG 665
Query 560 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACTAAGTTTATAGGAGCATCCATG 619
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 666 GTCGCCGTCTGGCAGAAGCTCGATCATCCCAACGTTACCAAGTTTATAGGAGCATCCATG 725
Query 620 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGCGCA 679
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 726 GGAACCTCTGATCTGCGGATCCCTCCTGCTGGTGATACTGGCGGACGTGGTAACGGTGCA 785
Query 680 CATCCTGCAAGGGCCTGTTGTGTTGTCGTTGAATATGTTGCCGGAGGCACGCTCAAGAAG 739
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 786 CATCCTGCGAGGGCCTGTTGTGTTGTGGTTGAATATGTTGCCGGAGGCACGCTTAAGAAG 845
Query 740 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TTCCTCATCAAGAAATATAGGGCCAAACTACCCATCAAGGATGTCATTCAGCTCGCTTTG 905
Query 800 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATCGGGACGTGAAG 859
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 906 GATCTCGCTAGAGGGCTTAGTTACCTCCACTCCAAGGCGATTGTACATAGGGACGTGAAG 965
Query 860 TCAGAGAACATGCTGTTACAACCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 919
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 966 TCAGAGAACATGCTGTTACAGCCTAACAAGACGCTGAAGATCGCTGATTTCGGGGTAGCT 1025
Query 920 AGAGTCGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 979
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 AGAGTTGAAGCTCAGAACCCTCAAGACATGACGGGTGAAACTGGAACACTTGGATACATG 1085
Query 980 GCACCAGAGGTTCTTGAAGGAAAGCCGTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1039
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 GCACCAGAGGTTCTTGAAGGAAAGCCTTACAACAGGAAATGCGATGTCTATAGCTTTGGG 1145
Query 1040 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GTATGCCTCTGGGAAATATACTGCTGTGACATGCCCTATGCTGACTGTAGTTTTGCTGAG 1205
Query 1100 ATCTCTCACGCCGTCGTTCATAAGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGAAT 1159
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 1206 ATCTCTCACGCCGTTGTTCATAGGAATCTGAGACCAGAGATTCCGAAATGCTGCCCGCAT 1265
Query 1160 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 GCGGTGGCAAACATCATGAAGAGATGCTGGGACCCGAATCCAGACAGGCGTCCGGAGATG 1325
Query 1220 GAGGAGGTGGTGAAGCTGCTGGAAGCCATAGACACAAGCAAAGGCGGTGGAATGATAGCT 1279
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 1326 GAGGAGGTGGTGAAGCTGCTTGAAGCCATAGACACAAGCAAAGGTGGTGGAATGATAGCT 1385
Query 1280 CCAGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAAtctctcta 1339
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 CCGGACCAGTTTCAGGGGTGCCTCTGTTTCTTCAAACCTCGAGGCCCCTGAATCTCTCTC 1445
Query 1340 tctctctctcGTTCCTTTT-GCTCCGTGTC-GA-ATATTCTTGAGAGCTGCGTGATTGAT 1396
| |||||| |||||||| |||||||||| || ||||||||||||||||||||||| |
Sbjct 1446 -C-CTCTCT--TTCCTTTTTGCTCCGTGTCTGATATATTCTTGAGAGCTGCGTGATTCTT 1501
Query 1397 TC--TTTGG-ATTT--T--G---TA-G----TTGGATTGGTGTGGGTTTTGTCATAAGAA 1441
| ||| | |||| | | || | |||||||||||||||||||||||||||||
Sbjct 1502 TGGATTTTGTATTTACTTTGAGCTATGGGAGTTGGATTGGTGTGGGTTTTGTCATAAGAA 1561
Query 1442 TCTTACTGCTCTCTATGTAT 1461
|||| |||| ||||||||||
Sbjct 1562 TCTTTCTGCGCTCTATGTAT 1581
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72037782075
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5