BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486835
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63290.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-depen... 1491 0.0
> AT3G63290.1 | Symbols: | 2-oxoglutarate (2OG) and Fe(II)-dependent
oxygenase superfamily protein | chr3:23381645-23383434
FORWARD LENGTH=1655
Length=1655
Score = 1491 bits (807), Expect = 0.0
Identities = 1000/1090 (92%), Gaps = 26/1090 (2%)
Strand=Plus/Plus
Query 1 ATGGCAGAAGCAGAGATTCTTGAGCCCTATCAACTGTCCTTCTCGGATCTTCTCTTGTCC 60
||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 69 ATGGCAGAAACAGAGATTCTTGAGCCCTATCAACTGTCGTTCTCGGATCTTCTTTTGTCC 128
Query 61 TCTCGCTTTCATTCTTCTTCTCCGAGTGACGACCGTATCTCGAGAAATGTGATGGACGCT 120
||||| | | || | ||| | | | | | ||||||| ||||||||||||||||
Sbjct 129 TCTCG---T-AATC-GC-TCT-C-A---ATG---G-ATCTCGAAAAATGTGATGGACGCT 173
Query 121 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCCTTCTC 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 CTTGGCCCCACCGGTCCTGGTCTCCTTTGTATCACCGGCGTTCTTGGCTCCGCCTTTCTC 233
Query 181 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTTGATCCGGACAAGCGGAAA 240
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 234 CGCCGTAAACTCCTTCCTATGGCTCGGAAGCTGGCTCTGCTCGATCCGGACAAGCGGAAA 293
Query 241 CGCATTCTCAAGGAGCACCACTTGGGTAGCGACCTTCCTCTCAAGAATCCAGAACGAGAT 300
| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 294 CTCATTCTCATGGAGCACCACTTGGGTAGCGACGTTCCTCTCAAGAATCCAGAACGAGAT 353
Query 301 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAACAACAACTTGTAAATCTTCACTGGAA 360
|||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| |
Sbjct 354 GTCTCCTCTTTTGCAATGCAGCTCAATTATGAAAGAACAACTTATAAATCCTCACTGGGA 413
Query 361 AAGCTGTGGTTCGATGAGGCTGTAGCAAAACTGGACTTGCAGCAGGAGGATGATGA-G-T 418
|||||||||||||||||||||| | ||||||||||||||||| |||| |||||||| | |
Sbjct 414 AAGCTGTGGTTCGATGAGGCTGGATCAAAACTGGACTTGCAGGAGGATGATGATGATGCT 473
Query 419 T-CACTAATCTTGGTGGTGCTTTTAAAGAGCTAGGGTTCTGCATGAGGGAATTGGGCTTG 477
| ||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 474 TTCACAAATCTTGGTGGTGCTTTTAAAGAACTCGGGTTCTGCATGAGGGAGTTGGGCTTG 533
Query 478 TCTATAGCTCGTCTTTGCGACAGGGAGATTGGTGGAGGCTTGCTGGAGGAGAGTTTACTG 537
|| ||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 534 TCCATAGCTCGTCTATGCGACAGGGAGATTGGCGGAGGCTTGCTGGAGGAGAGCTTACTG 593
Query 538 GAGTCTCGCACAGCTAAAGGACGCCTTATACATTACCACTCAGCTGCAGATAAATATGCT 597
|| ||| ||||||| |||||||| || |||||||||||||| ||||| ||||||||||||
Sbjct 594 GATTCTTGCACAGCCAAAGGACGTCTCATACATTACCACTCCGCTGCTGATAAATATGCT 653
Query 598 CTCAGAGAAGCCGAGAGCAGAAACCAATCTGGTAGAC-GAGTATCGAGCAAGAGGAGAGT 656
||||||||| || |||| |||||||||||||||| || ||||||| ||||||||||||||
Sbjct 654 CTCAGAGAATCCCAGAGGAGAAACCAATCTGGTA-ACCGAGTATCAAGCAAGAGGAGAGT 712
Query 657 CCAGAATGCTGCTGAGCAAGAGGGGAACCACAGAAATGGAGCTGGTTTGAGTGGGAGCCA 716
|||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 713 CCAGAACGCTGCTGAGCAAGAGCTGAACCGTAGAAATGGAGCTGGTTTGAGTGGGAGTCA 772
Query 717 CTTCAATCTCTGGCAACAGTGGCATTACGATTATGGAATCTTTACTGTTCTCACCGATCC 776
||||||||| ||||| |||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 773 CTTCAATCTGTGGCAGCAGTGGCATTACGATTATGGCATCTTTACTGTTCTCACGGATCC 832
Query 777 TATGTTTCTATCGTCC-TACTCCTA-CGAGGAATGCACTTTGATGAGCAGCCATTCTTAT 834
||||||||||||| || || ||||| | |||||| || |||||||||||||||||||||
Sbjct 833 TATGTTTCTATCG-CCGTATTCCTATC-AGGAATTCAGTTTGATGAGCAGCCATTCTTAC 890
Query 835 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAGGACAGT 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 891 CTGCAGATCTATCATCCCAGCAAGAACAAGTTCTACATGGTCAAGACTCCACAAGACAGT 950
Query 895 TTTATTGTTC-AAATTGGAGAATCTGCTGATATTTTGTCCAAAGGGAGGCTACGGTCGAC 953
||| ||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 951 TTT-TTGGTCCAAATCGGAGAATCTGCTGATATTTTGTCCAAAGGGAAGCTACGGTCGAC 1009
Query 954 CCTTCACTGTGTGTGCAAACCAGAGAAGCCGGATCACATAAGCCGTGAGACATTTGTGGT 1013
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||
Sbjct 1010 CCTTCACTGTGTGTGCAAACCAGAGAAGCTGGATCACGTAAGCCGTGAGACATTTGTTGT 1069
Query 1014 GTTCTTGCAGCCAAAGTGGAGCCAAACTTTCTCGGTCTCAGAATATACAATGGAACATCT 1073
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1070 CTTCTTGCACCCAAAGTGGAGCCAAACTTTCTCAGTCTCAGAATATACAATGGAACATCT 1129
Query 1074 AAGGTCAGAT 1083
|||||| |||
Sbjct 1130 AAGGTCGGAT 1139
Score = 652 bits (353), Expect = 0.0
Identities = 473/526 (90%), Gaps = 27/526 (5%)
Strand=Plus/Plus
Query 1111 GATGAGGTCGTCCCTAGACCAGATATACAAAAAATTGTTCCACCTCTATCGTCTCGGTTA 1170
|||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||
Sbjct 1137 GATGAGGTCGTCCCTAGACCAGATTTACAGAATATTGTTCCACCTCTATCGTCTCGGTTA 1196
Query 1171 AGGGATGGGATGACATTTGCCGAGTTTTCTCGCGAAACCACAAAGCAGTACTACGGAGGG 1230
|||||||||||||| |||||||||||||| || ||||| |||||||||||||||||||||
Sbjct 1197 AGGGATGGGATGACTTTTGCCGAGTTTTCACGTGAAACGACAAAGCAGTACTACGGAGGG 1256
Query 1231 AGTGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTAAATAGCTTGTTTGTCTAATATT 1290
| ||||||||||||||||||||||||||||||||||| |||||| |||||| | |
Sbjct 1257 AATGGTTTGCAATCTAATAGATAGCCGTGCCCCAGGTTAATAGC----TTGTCT-A-A-- 1308
Query 1291 TAGACTTTAGGTAGTTAACTTCAGAATAATCTTTAGGTAATGAGTAGTTGAAGGCAAGAA 1350
| |||||||||||||| |||| |||||||||||||||||||||||| ||||||||||
Sbjct 1309 T---CTTTAGGTAGTTAAATTCAAAATAATCTTTAGGTAATGAGTAGTGGAAGGCAAGAG 1365
Query 1351 GAATGAGCCACGAGGGTTTGTACTAAAAGAGATTAGATTAAAGGGAAAGTTGGGATTCGT 1410
|||||||||| ||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 1366 GAATGAGCCAAGAGGGTTAGTTGTAAAAGAGATTAGATTAAAGGGAGAGTTGGGATTCGT 1425
Query 1411 TATGTGTACTTCGATGTTGGAGCC--AA-AACAGGGGAAGCTGTTACATCGTTTTCACAG 1467
|||||||||||||||||||||||| || ||||| | |||||||||||||||||||||||
Sbjct 1426 TATGTGTACTTCGATGTTGGAGCCAAAACAACAGTGAAAGCTGTTACATCGTTTTCACAG 1485
Query 1468 ACAAAAGCTCTCTCTTTCAAACATGCtttttttGTTTGTTGTTGTTGCTCTTCTTTAGTC 1527
||||||||||| ||||||||||||| |||||| ||||| |||||||||||||||||
Sbjct 1486 TCAAAAGCTCTCCCTTTCAAACATGC--TTTTTG---GTTGTGGTTGCTCTTCTTTAGTC 1540
Query 1528 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCCGATGCTGTTCCAAACTTAC 1587
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1541 TCTCTCTGTGACTCAGTTTATGTTCCTGTTGTGTCTCCCCTGTTGCTGTTCCAAACTTAC 1600
Query 1588 ATCTCTTTGTTTGTTTGTGTGCTTTCAAGCGTCGCATTGAGACAAA 1633
||||||||||||| ||||||||||||||||| |||||||
Sbjct 1601 ATCTCTTTGTTTG--------CTTTCAAGCGTCGCATTAAGACAAA 1638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5