BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486837
Length=1633
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63300.1 | Symbols: FKD1 | FORKED 1 | chr3:23384988-23387842... 2586 0.0
> AT3G63300.1 | Symbols: FKD1 | FORKED 1 | chr3:23384988-23387842
FORWARD LENGTH=1759
Length=1759
Score = 2586 bits (1400), Expect = 0.0
Identities = 1564/1641 (95%), Gaps = 20/1641 (1%)
Strand=Plus/Plus
Query 1 AAGCTCTGAAGTCGAAGCAAAG----TCA-agagagagagaaaggatggagagagaACTT 55
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 1 AAGCTCTGAAGTCGAAGCAAAGTTAATTACAGAGAGAGAGAAAGGATGGAGAGAGAACTC 60
Query 56 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCTGGCGGTAGT 115
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 AGACGACCGAACCCAATCAACAGCTCTCGCCGGCCGGAGATATTTTCTTCAGGCGGTAGT 120
Query 116 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AGTACTCAACTACCGGAAAGCCCACGAGGCCCAATGGAGTTCTTGTCTAGATCCTGGAGT 180
Query 176 GTCTCCGCCTTGGAAGTCTCCAGAGCTCTCCACACAGCCAAATCAGCTTCGGCCACCAAC 235
||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 181 GTCTCTGCCTTGGAAGTCTCCAGAGCTCTCCACACCGCCAAATCAGCTTCAGCCACCAAC 240
Query 236 AGGCCTCCCTCGTCCATTAACACTCCGATACCGGAAGAAACGTTAAACCCTGAGAAAGAA 295
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 AGGCCTCCCTCATCCATTAACACTCCGATACCGGAAGAAACGCTAAACCCTGAGAAAGAA 300
Query 296 GAATGTCCGCCGGAGAACACCAGCAACAATAGTAGTGTTAGTAGTCAGTTCTCGTTCGCT 355
||||||||||||||| | | ||| || |||||||||||| |||||||||||||||
Sbjct 301 GAATGTCCGCCGGAG-A-A-CAG------TACTAGTGTTAGTAGCCAGTTCTCGTTCGCT 351
Query 356 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 GCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGGAGGTGTCACCG 411
Query 416 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 TTAACGTCGGGGAGGCTATCACACAGCAGCGGCCCACTCAACGGCGGCGGTTCTTTTACG 471
Query 476 GAGACAGACAGTCCTCCCATCTCCCCCTCCGATGACTTCGACGACGTCGTCAAGTATTTT 535
||||||||||||||||| |||||||| |||||||| |||||||||||| |||||||||||
Sbjct 472 GAGACAGACAGTCCTCCTATCTCCCCTTCCGATGAATTCGACGACGTCATCAAGTATTTT 531
Query 536 CGCACCCACAACACCATACAGCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACT 595
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 CGCACCCACAACACCATACATCCTCTCTTCTCCGGCACAGGAGGCAGCCGTGGTACCACC 591
Query 596 GGAAATGGTAGCAATACCCCCATGGCTGGAACCGGCCCAAAGACAGTTGGTAGGTGGCTC 655
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 592 GGAAATGGGAGCAATACCCCCATGGCTGGAACCGGTCCAAAGACAGTTGGTAGGTGGCTC 651
Query 656 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAG-AGCTCAGAATGCACAGGTCCACGC 714
||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||
Sbjct 652 AAGGACCGTAAGGAAAAGAAGAAAGAAGAGACTAGGA-CTCAGAATGCACAGGTTCACGC 710
Query 715 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCCGTGGCAGCTGTTGCAGCAGCCACAGCTGC 774
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 711 AGCTGTTTCTGTTGCAGCGGTTGCATCTGCTGTGGCAGCTGTAGCAGCAGCCACAGCAGC 770
Query 775 TTCTTCACCTGGTAAAAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCTGCGGC 834
|||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 771 TTCTTCCCCTGGTAAGAACGAGCAGATGGCCAGAATCGATATGGCCATGGCTTCAGCGGC 830
Query 835 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGAAAGGGATT- 893
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 831 TGCTCTGGTGGCTGCTCAGTGTGTGGAGGCTGCAGAAATCATGGGAGCAGATAGGGATCA 890
Query 894 TTCTGACATCCGTTGTGAGCTCTGCAGTGAATGTTAAGTCCCATGACGATATTGTCACCC 953
|| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 891 TT-TGACATCCGTGGTGAGCTCTGCCGTGAATGTTAAGTCCCATGACGATATTGTCACCC 949
Query 954 TTACTGCAGCTGCCGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1013
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 TTACTGCAGCTGCTGCAACAGCTCTGCGAGGAGCAGCTACACTCAAGGCAAGAGCGCTTA 1009
Query 1014 AAGAAGTATGGAACATAGCTGCAGTATTACCAGCCGAGAAAGGAACAAGTTCAGCTTTGT 1073
| |||||||||||||||||||||||||| |||||||||||||| |||||||||| ||||
Sbjct 1010 AGGAAGTATGGAACATAGCTGCAGTATTGCCAGCCGAGAAAGGGGCAAGTTCAGCGTTGT 1069
Query 1074 GTGGCCAGGTTGACACAAAGCACAGTGATAGCAGCTTTAGTGGAGAATTACCTGTTGCTG 1133
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1070 GTGGACAGGTTGACACAAAGCATAGTGATAGCAGCTTTAGTGGAGAATTACCTGTGGCTG 1129
Query 1134 GGGAAGACGTCCTAGGCGTCTGTAACCAGGAACTACTAGCTAAAGGCACTGAGCTCCTCA 1193
|||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1130 GGGAAGACTTCCTTGGCGTCTGTAACCAGGAATTACTAGCTAAAGGCACTGAGCTCCTCA 1189
Query 1194 AACGAACTCGTGGAGGTGATCTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1253
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 AACGAACTCGTGGAGGTGAACTCCACTGGAAGATTGTCTCTGTCTACATCAACAAAGCAG 1249
Query 1254 GCCAAGTTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1313
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 GCCAAGCTGTGCTGAAAATGAAAAGTAAACACGTTGGAGGGACCTTCACAAAGAAGAAGA 1309
Query 1314 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGGGATCTTTTCA 1373
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1310 AACATATGGTGCTTGAAGTGAGAAAGGATATACCTGCATGGGCTGGCAGAGATCTTTTCA 1369
Query 1374 ACGGAGACAAGCATCATTACTTTGGCTTAAAGACGGAAACAAAGAGGGTCGTTGAATTTG 1433
|||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1370 ACGGAGACAAGCATCACTACTTTGGCTTAAAGACAGAAACAAAGAGGGTCATTGAATTTG 1429
Query 1434 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTTTGCC-GCCTACTTGCC 1492
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||
Sbjct 1430 AGTGCAGAAACCAAAGGGAATACGAGATATGGACTCAGGGCGTAT-CCAGGCTACTTGCC 1488
Query 1493 ATTGCAGCTGAGAGGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1552
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 ATTGCTGCTGAGAAGAAGCAGAAAAGTTCCATGTCCAAATGGATGGCACCTTAACAACAT 1548
Query 1553 AAACTAGGAGAGAAGTAGATGCTTTGTGGAACGAAGTGCTTATTATAAGAATAGGTTGAA 1612
|| |||||| ||||||||||||||||| ||||||| ||||||| ||||||||||||| ||
Sbjct 1549 AAGCTAGGAAAGAAGTAGATGCTTTGTAGAACGAACTGCTTATGATAAGAATAGGTTTAA 1608
Query 1613 ACATAATGGAGTAGAAGACAT 1633
|||||||||||||||||||||
Sbjct 1609 ACATAATGGAGTAGAAGACAT 1629
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80672275815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5