BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486839
Length=793
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63310.1 | Symbols: BIL4 | Bax inhibitor-1 family protein | ... 1218 0.0
> AT3G63310.1 | Symbols: BIL4 | Bax inhibitor-1 family protein
| chr3:23387856-23388985 REVERSE LENGTH=905
Length=905
Score = 1218 bits (659), Expect = 0.0
Identities = 722/753 (96%), Gaps = 2/753 (0%)
Strand=Plus/Plus
Query 40 CCGGCGTTGACAAAACAAAAAACGAATTGGGAAGATGTGGAACCAGAAGCATGATTTGGA 99
||||||||||| ||| ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct 72 CCGGCGTTGAC-AAA-AAAAAACGAATCCGGAAGATGTGGAATCAGAAGCATGATTTGGA 129
Query 100 GTCGGCTCAGACGCCTCTGTACCCTATGATGTTGGAGAGCCCCGAGCTCCGATGGTCTTT 159
|||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 130 GTCGGCTCAGACGCCTCTCTACCCGATGATGTCGGAGAGCCCGGAGCTCCGATGGTCTTT 189
Query 160 CATCCGCAAGGTCTATTCAATCATCTCCATCCAGTTGCTCGTTACAATCGCCGTGGCTGC 219
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 190 CATCCGCAAGGTCTATTCCATCATCTCCATCCAGCTGCTCGTTACAATCGCCGTCGCTGC 249
Query 220 CACCGTCGTGAAGGTTCATTCGATTTCTGTCTTCTTCACCACCACCACCGCCGGCTTCGC 279
||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 250 CACCGTCGTTAAGGTTCATTCTATTTCTGTATTCTTCACCACCACCACCGCCGGCTTCGC 309
Query 280 TCTCTACATACTTGTTATTTTCACTCCATTGATTGTTATGTGTCCATTGTATTACTATCA 339
||||||||||||| |||| || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 310 TCTCTACATACTTCTTATATTGACTCCATTGATCGTTATGTGTCCTTTGTATTACTATCA 369
Query 340 CCAGAAGCACCCTGTGAACTATCTCTTGCTCGGCATTTTCACCGTCGCTCTTGCCTTTGC 399
|||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct 370 CCAGAAGCACCCTGTGAACTATCTGTTACTCGGGATTTTCACCGTCGCTCTTGCCTTTGC 429
Query 400 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GGTTGGCTTGACCTGCGCCTTTACAAGCGGGAAGGTGATTCTGGAATCTGTGATTTTGAC 489
Query 460 CTCTGTTGTGGTCATATCCCTCACTCTCTACACTTTCTGGGCTGCCAAAAGAGGCCATGA 519
| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 490 CGCTGTTGTGGTCATATCCCTCACTCTATACACTTTCTGGGCGGCCAAAAGAGGCCATGA 549
Query 520 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 CTTCAACTTCCTCGGACCTTTCTTGTTCGGTGCTGTCATTGTCCTCATGGTGTTTTCCTT 609
Query 580 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCAGTGATGATCTATGGTTGTTTGGCTTC 639
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 610 CATCCAGATTCTCTTCCCTTTAGGAAAGATCTCTGTGATGATCTATGGTTGTTTGGCATC 669
Query 640 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 670 CATCATCTTCTGTGGCTACATTGTATATGATACCGACAACTTGATCAAGAGGCACTCCTA 729
Query 700 TGACGAGTACATCTGGGCTGCAGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 759
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 730 TGACGAGTACATCTGGGCTGCTGTTTCTCTTTATTTGGATGTCATTAATCTCTTCCTATC 789
Query 760 TCTGCTCACTCTCTTAAGGGCTGCTGATAGTTA 792
||| ||||||||||||||||||| |||||||||
Sbjct 790 TCTCCTCACTCTCTTAAGGGCTGTTGATAGTTA 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38579824896
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5