BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486840
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63320.1 | Symbols: | Protein phosphatase 2C family protein... 1748 0.0
AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein... 730 0.0
> AT3G63320.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:23389838-23391556 REVERSE LENGTH=1272
Length=1272
Score = 1748 bits (946), Expect = 0.0
Identities = 1120/1201 (93%), Gaps = 23/1201 (2%)
Strand=Plus/Plus
Query 1 ATGGTGGAGCTCCGGCTGTGTTCCGATCTCCCAATTG-CC-CTCT----T-T--GGAATC 51
|||||||||||||||| || ||||||||||||||||| || |||| | | |||||
Sbjct 1 ATGGTGGAGCTCCGGCAGTTTTCCGATCTCCCAATTGCCCTCTCTGGAATCTCCAGAATC 60
Query 52 GCCGATCCTTATCCTCCTCCTCCAGTCGTTGCCATACGGCGGCGATTCAAGGTCGGAGGA 111
|||||||||| |||||| || ||||||||||||||||||||||||||||||| |||||||
Sbjct 61 GCCGATCCTTCTCCTCCCCCGCCAGTCGTTGCCATACGGCGGCGATTCAAGGGCGGAGGA 120
Query 112 AATACCAGGAGGATCGTCTACTCTGCGCTCTTGATCTTCGCATTCCCTTTCCCGACTGGA 171
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 121 AATACCAGGAGGATCGTCTTCTCTGTGCCCTTGATCTTCGCATTCCCTTTCCCGACTGGA 180
Query 172 ACACCAAAGGATGTTGTGGTTGGAATCGCAGCTGTCTTTGACGGCCACAATGGTGCAGAA 231
||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 181 ACACCAAAGGATGTTTTGGTTGGAATCGCAGCTGTCTTTGACGGCCACAGTGGTTCAGAA 240
Query 232 GCCAGTGAGATGGCTTCACAACTTTTGTTGGATTATTTTGCTCTCCACACTTACTTTCTC 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GCCAGTGAGATGGCTTCACAACTTTTGTTGGATTATTTTGCTCTCCACATTTACTTTCTC 300
Query 292 CTCGACGCCACTTTTTCCAAGGAGCTCTCTGGAACGCTACCAAATTCACTCATGCATCTA 351
|| ||||| || ||||| ||||||||| |||||| |||||||||||||||||||||||||
Sbjct 301 CTGGACGCAACATTTTCTAAGGAGCTCACTGGAAAGCTACCAAATTCACTCATGCATCTA 360
Query 352 TACGACCTCAATTTCCAAAGGTTCCAAGATTCATCGCCGCTCAATTTTGGTGATTCTCTT 411
||||||||| ||| |||||||||||||||||||| ||||||| | | | | ||
Sbjct 361 TACGACCTCGATTCCCAAAGGTTCCAAGATTCATTGCCGCTC-A--------A-T-T-TT 408
Query 412 CACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCCACGATATTGATGCAACATTT 471
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 409 CACTTGGATATTCTGAAAGAAGCCTTGCTCAGAGCTATCTACGACATTGATGCAACATTT 468
Query 472 ACTAAGGAAGCATCTAAC-CGAAAGTTGGATTCAGGTTCAACGGCCACAGTTGCACTTAC 530
||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||
Sbjct 469 ACTAAGGAAGCATCT-ACTCGAAAGTTGGATTCAGGTTCAACGGCCACAATTGCACTTAT 527
Query 531 CGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCCGA 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 528 CGCAGATGGTCAACTACTGGTTGCTAGCATCGGTGATTCTAAGGCACTTTTGTGTTCTGA 587
Query 591 AAAATTTGAGACTCCTGAAGAGGCTAGAGCTACTTTAATAAAGTTTTACAGAGAGCGTAA 650
|| || |||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 588 AAGATATGAGACTCCTGAAGAGGCTAAAGCTACTTTAATAAAGTTGTACAGAGAGCGTAA 647
Query 651 GCGCAATCGAGACTCTTCCTCATCAAGGTTCTCTGATTTTAAGCTGGAACATCGCAATGG 710
|||||||| |||||||||| ||||||||||||||||||| |||||||||||||||| |||
Sbjct 648 GCGCAATCAAGACTCTTCCCCATCAAGGTTCTCTGATTTAAAGCTGGAACATCGCACTGG 707
Query 711 ACTCATACGTTTTATTGCCAAAGAATTGACTAAGGACCATCACCCAAATAGAGAGGATGA 770
|||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 708 ACTCATGCGTTTTATTGCCAAAGAATTGACAAAGGACCATCACCCAGATAGAGAGGATGA 767
Query 771 AATGCTCCGCGTTAAAGCTGCAGGAGGTTATGTCACTGAGTGGGCCGGTGTGCCACGGGT 830
||||||||| || ||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 768 AATGCTCCGAGTGAAAGCTGCAGGAGGTTATGTCACCAAGTGGGCCGGTGTGCCAAGGGT 827
Query 831 GAATGGTCAGCTGGCTGTCTCCCGTTCAATTGGTGACCTTACTTATAAAAGTTACGGTGT 890
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 828 GAATGGTCAGCTGGCTGTCTCCCGTTCGATTGGTGACCTTACTTATAGAAGTTACGGTGT 887
Query 891 CATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTACTGGCTAATGACAGCTACTTGGT 950
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 888 CATCTCTGCACCTGAGGTGATGGACTGGCAGCCTCTAGTGGCTAATGACAGCTACTTGGT 947
Query 951 AGTGTCATCTGATGGCATCTTTGAAAAGTTGGAGGTGCAAGATGTATGTGATCGTCTGTG 1010
||||||||||||||| |||||||| ||||| ||||||||||||| ||| ||||| |||||
Sbjct 948 AGTGTCATCTGATGGTATCTTTGAGAAGTTAGAGGTGCAAGATGCATGCGATCGCCTGTG 1007
Query 1011 GGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCAGTTTCTTT 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1008 GGAAGTAAAGAATCAAACTAGCTTTGGAGCAGGAGTGCCTTCATATTGCTCAATATCTTT 1067
Query 1071 GGCAGAATGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATGGCTGCAGT 1130
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1068 GGCAGACTGCTTGGTTAATACTGCCTTTGAGAAGGGAAGTATGGATAATATGGCTGCAGT 1127
Query 1131 CGTGGTTCCTCTAAAATCCAATCTAGATTGGCAGAGCCAACCAAAAGAGCAATCTGAGGG 1190
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1128 CGTGGTTCCTCTAAAATCCAATCTAGATTGGGAGAGCCAACCAAAAGAGCAATCTGTGGG 1187
Query 1191 T 1191
|
Sbjct 1188 T 1188
Score = 78.7 bits (42), Expect = 1e-13
Identities = 49/52 (94%), Gaps = 2/52 (4%)
Strand=Plus/Plus
Query 1211 CTTCGAGATTGC-AGATGAAGAATACATATGCACTGCCATGTGAGTTTCTCT 1261
||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CTTCGGGATT-CAAGATGAAGAATACATATGCACTGCCATGTGAGTTTCTCT 1240
> AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein
| chr3:23391628-23398377 REVERSE LENGTH=3953
Length=3953
Score = 730 bits (395), Expect = 0.0
Identities = 494/542 (91%), Gaps = 6/542 (1%)
Strand=Plus/Plus
Query 618 AGCTACTTTAATAAAGTTTTACAGAGAGCGTAAG-CGCAATCGAGACTCTTC-CTCATCA 675
||||||||| | ||||| ||||||||||| ||| |||||||| | |||||| | |||||
Sbjct 1287 AGCTACTTTGGTGAAGTTGTACAGAGAGCG-AAGACGCAATCGGGGCTCTTCAC-CATCA 1344
Query 676 AGGTTCTCTGATTTTAAGCTGGAACATCGCAATGGACTCA-TACGTTTTATTGCCAAAGA 734
||||||||||| ||||| ||||||||| |||||||||| | | ||||| |||||||||||
Sbjct 1345 AGGTTCTCTGACTTTAAACTGGAACATGGCAATGGACT-ACTGCGTTTCATTGCCAAAGA 1403
Query 735 ATTGACTAAGGACCATCACCCAAATAGAGAGGATGAAATGCTCCGCGTTAAAGCTGCAGG 794
|||||| ||||||||||||||||||||||||||||||| | | || ||| ||||||||||
Sbjct 1404 ATTGACAAAGGACCATCACCCAAATAGAGAGGATGAAAAGATTCGTGTTGAAGCTGCAGG 1463
Query 795 AGGTTATGTCACTGAGTGGGCCGGTGTGCCACGGGTGAATGGTCAGCTGGCTGTCTCCCG 854
||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 1464 AGGTTATGTCACTGAGTGGGCCGGTGTGCCACGAGTGAATGGCCAGCTGACTGTCTCCCG 1523
Query 855 TTCAATTGGTGACCTTACTTATAAAAGTTACGGTGTCATCTCTGCACCTGAGGTGATGGA 914
| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 1524 TGCAATTGGTGACCTTACTTATAGAAGTTATGGTGTCATCTCTGCACCTGAGGTGATGGA 1583
Query 915 CTGGCAGCCTCTACTGGCTAATGACAGCTACTTGGTAGTGTCATCTGATGGCATCTTTGA 974
||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 1584 CTGGCAGCCTCTAGTGGCTAATGACAGCTTCCTGGTAGTGTCATCTGATGGCATCTTTGA 1643
Query 975 AAAGTTGGAGGTGCAAGATGTATGTGATCGTCTGTGGGAAGTAAAGAATCAAACTAGCTT 1034
||||||||||||||||| |||||||||| | ||||||||||||| |||||||||||||
Sbjct 1644 GAAGTTGGAGGTGCAAGAAGTATGTGATCTTTTGTGGGAAGTAAACAATCAAACTAGCTC 1703
Query 1035 TGGAGCAGGAGTGCCTTCATATTGCTCAGTTTCTTTGGCAGAATGCTTGGTTAATACTGC 1094
||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||
Sbjct 1704 TGGAGCAGGAGTGCCTTCATACTGCTCAATTTCTTTGGCAGACTGCTTGGTTAATACTGC 1763
Query 1095 CTTTGAGAAGGGAAGTATGGATAATATGGCTGCAGTCGTGGTTCCTCTAAAATCCAATCT 1154
||||||||||||||| ||||| ||||||||||| || || || ||||||||||| |||||
Sbjct 1764 CTTTGAGAAGGGAAGCATGGACAATATGGCTGCTGTTGTTGTCCCTCTAAAATCGAATCT 1823
Query 1155 AG 1156
||
Sbjct 1824 AG 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62098074165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5