BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486842
Length=1400
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein... 2043 0.0
> AT3G63340.2 | Symbols: | Protein phosphatase 2C family protein
| chr3:23391628-23398377 REVERSE LENGTH=3953
Length=3953
Score = 2043 bits (1106), Expect = 0.0
Identities = 1236/1298 (95%), Gaps = 11/1298 (1%)
Strand=Plus/Plus
Query 1 TAACGCTACTAGTTCGATCGATGAAGATAAAAATACATCGAAAAATGGTGTTCATTATGA 60
||||||||||||||||||| |||||||| | |||||||| ||||||||||||||| ||||
Sbjct 2376 TAACGCTACTAGTTCGATCAATGAAGATGAGAATACATCAAAAAATGGTGTTCATAATGA 2435
Query 61 TGCTGATGGTCCTAATAACTCCTTCATTTTGAAGCGGATAATGGTAGAGAGAGGACCAAC 120
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2436 TACTGATGGTCCTAATAACTCCTTCATTTTGAAGCGGATAATGGTCGAGAGAGGACCAAC 2495
Query 121 TGTTTATTTAAGTGGTCTAAGGGAGAAGCATTTTGGTGAACTGTTTCTAAATGCATATAA 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2496 CGTCTATTTAAGTGGTCTAAGGGAGAAGCATTTTGGTGAACTGTTTCTAAATGCATATAA 2555
Query 181 TATAAGTGAGAGTTCTTCTGCAACGCAAACGTCAAGTTCTCAACCAGCGTCATCAGGATT 240
| |||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||
Sbjct 2556 TGTAAGTGAGAGTTCTTCTGCAACGCAAGCGTCAAGTTCTCAAGCAGCGTCATCAGAATT 2615
Query 241 GGGTCTCTCTGAAGAGGGTTTGAAACATATTGCTAGATACATAGAGTATTTTGAATCTCG 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2616 GGGTCTCTCTGAAGAGGGTTTGAAACATATAGCTAGATACATAGAGTATTTTGAATCTCG 2675
Query 301 ATATAATGACATATGGCTTGTGTTTCACCACGAGGGTGCATCTTTATCAAAGCTGATGTA 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2676 ATATAATGACATATGGCTTGTGTTTCACCACGAGGGTGTATCTTTATCAAAGCTGATGTA 2735
Query 361 CACTGCGGAAGAAGCAGAGAATAGCTCTGCTGGTGAAAAGGCTGAAGAAGCAAGTCACGG 420
||||| |||||||||||||| ||| || | ||||||||||||||| |||||||||||
Sbjct 2736 CACTGTGGAAGAAGCAGAGATTAG--CT-C---TGAAAAGGCTGAAGAGGCAAGTCACGG 2789
Query 421 GCAGATACTTCGTCCGTCGAAGTGGTGGACCTGGTTGAAGACGACAGAATCAGGAAAAGA 480
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 2790 GCAGATACTTCGTCCGTCAAAGTGGTGGACCTGGCTGAAGACGACAGAATCAGGAAAAGA 2849
Query 481 AGAAATGCGGAGAATAATATGGCAATTGTTGCTAGGTCTAAAGGCATGCCATGATCGCAA 540
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2850 AGAAATGCGGAGAATAATATGGCAATTGTTGCTAGGTTTAAAGGCATGCCATGATCGCAA 2909
Query 541 CATTACTCACAGAGATATAAAACCCGAGAATATGGTGATATGCATTGAAGACATCAAGTC 600
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2910 TATTACTCACAGAGATATAAAACCCGAGAATATGGTGATATGCCTTGAAGACATCAAGTC 2969
Query 601 CGGAAGATGCTTAAAGGGTGTACCAAATGGAGATCATAACTTCAAAACTAAAATGCGCAT 660
|| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||
Sbjct 2970 AGGCAGATGCTTAAAGGGTGTACCAAATGGGGATCAAAACTTCAAAACTAATATGCGCAT 3029
Query 661 CATCGACTTTGGCAGTGCACTTGATGAGTATACAATGAAACATTTATATGGGTCAACAGG 720
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 3030 CATCGACTTTGGCAGTGCACTTGATGAGTATACAATAAAACACTTATATGGGTCAACAGG 3089
Query 721 TCCATCAAGAGCAGAACAAACTCATGATTATGCACCACCCGAAGCCATTATGAACAGTAG 780
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 3090 ACCGTCAAGAGCAGAACAAACTCATGATTATGCACCACCCGAAGCCATTCTGAACAGCAG 3149
Query 781 CTGGCACCATGGACCGACCAGTTTGGCACTGAAATACGACATGTGGAGTGTTGGGGTTGT 840
|||||||||||| || ||||||||| || |||||||||||||||||||||||||||||||
Sbjct 3150 CTGGCACCATGGGCCAACCAGTTTGACATTGAAATACGACATGTGGAGTGTTGGGGTTGT 3209
Query 841 GATGTTAGAGATGATTTTAGGATCACCCAATGTTTTTGAGATTAGTTCTGTTACACGTGC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3210 GATGTTAGAGATGATTTTAGGATCACCCAATGTTTTTGAGATTAGTTCTGTTACACGTGC 3269
Query 901 CCTTTTGGATCAACATATCAGAGGTTGGAGTGAAAACTTTAAAGAGCTTGCATACAAGCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3270 CCTTTTGGATCAACATATCAGAGGTTGGAGTGAAAACTTTAAAGAGCTTGCATACAAGCT 3329
Query 961 TCGATCCCTTA-TGGAGATGTGCATCTTAATCCCAGGTAGTTCTTTAAAACATGGTGGCG 1019
||||||| ||| |||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 3330 TCGATCC-TTAATGGAGATGTGCATCCTAATCCCAGGTAGCTCTTTAAAACATGGTGGCG 3388
Query 1020 CCAGCTCAAAGCAGGGTGGGATTTCACTTGCGTCATGGAAATGCTCTGAAGAATTTTTTG 1079
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3389 CCAGCTCAAAGCAGGGTGGAATTTCACTTGCGTCATGGAAATGCTCTGAAGAATTTTTTG 3448
Query 1080 CAGAACAGATAAAAAGTAGAGACCCTCTGAAGATTGGGTTTCCAAATGTTTGGGCGTTAA 1139
||||||||||||| || |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 3449 CAGAACAGATAAAGAGCAGAGACCCACTGAAGATTGGGTTTCCAAATGTTTGGGCATTAA 3508
Query 1140 GGTTGGTGAGGGCTCTATTACAATGGTACCCTGAGGACAGAGTAACCGTAGATGAGGCTC 1199
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3509 GGTTGGTGAGGGGTCTATTACAATGGTACCCTGAGGACAGAGTAACCGTAGATGAGGCTC 3568
Query 1200 TGCAGCACCCTTATTTCCAGCCCTCTCCCAACTCCTAAGTGTAGAGAAGAGTAAGATGGA 1259
||||||||||||||||||||||| |||||| |||||||| |||||||||| | ||||||
Sbjct 3569 TGCAGCACCCTTATTTCCAGCCCCCTCCCAGCTCCTAAGAGTAGAGAAGA--A-GATGGA 3625
Query 1260 TTATGTAGGAACAAGGTTGGAACGAGCAAGGGAAGATT 1297
|||||||||||||||||| ||||||||||||||||||
Sbjct 3626 TTATGTAGGAACAAGGTTAAAACGAGCAAGGGAAGATT 3663
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68975548830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5