BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486851
Length=1893
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63430.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1195 0.0
> AT3G63430.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G74160.1);
Has 135 Blast hits to 119 proteins in 22 species: Archae -
0; Bacteria - 2; Metazoa - 3; Fungi - 3; Plants - 119; Viruses
- 0; Other Eukaryotes - 8 (source: NCBI BLink). | chr3:23420366-23422399
FORWARD LENGTH=1869
Length=1869
Score = 1195 bits (647), Expect = 0.0
Identities = 846/935 (90%), Gaps = 42/935 (4%)
Strand=Plus/Plus
Query 898 GGGA-CGGATTTCCCCGAGCGTCAAT---AGGAGACCAAGACCAACGCTCAAGGAACAGA 953
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 797 GGGATCGCATTTCCCCGAGCGTCAATAGGAGGAGACCAAGACCAACGCTCAAGGAACAGA 856
Query 954 GGAGAGTCGCTCCACTCCCTTGGCGGAGACCAGAACCTCTCCAGTGGAGGATTGAAGACC 1013
|||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 857 GGAGAGTCTCTTCACTCCCTTGGCGGAGACCAGAACCTCTCCAGACGAGGATTGAAGACC 916
Query 1014 AGAGTAGCAGCACTCTAGCCGAGGAAACAAATTCTGATATGCAGATGTGGAAAGTGGATG 1073
||||| |||||||||||||| | || | | ||||||||||||||||||
Sbjct 917 AGAGT---AGCACTCTAGCCGA-G-----------GA-A-G-AGATGTGGAAAGTGGATG 958
Query 1074 TGTATAACAGACAAGGCAAAACCTTATTGGAGAGATGCGACAAGCTGCTCCACAGCATTG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TGTATAACAGACAAGGCAAAACCTTATTGGAGAGATGCGACAAGCTGCTCCACAGCATTG 1018
Query 1134 CGGAAATGGCGGCGGCGGCTGAGGCCGGAGAGTCACAACCGAGCCCCGTCTCTGTTCTTG 1193
| |||||||| || | |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1019 CTGAAATGGC--CG-CTGCTGAGGCCGGAGACTCACAACCGAGCCCCGTCTCTGTTCTTG 1075
Query 1194 ACGCCTCAATTTACCACGAGGACTCTTCCCCGTCTCCTGTCATGAAACGCACCCTTGACT 1253
|||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||||||
Sbjct 1076 ACGCCTCAATTTACCACGAGGACTCTTCTCCGTCCCCCGTCCTGAAACGCACCCTTGACT 1135
Query 1254 TTTCTG---CTGAATCCGAAGACGAATCCTGGGGTGGCTCAGTATTATCATCGTCCGACT 1310
|| ||| ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 TTGCTGATGCTGAA---GAAGACGAATCCTGGGGTGGCTCAATATTATCATCGTCCGACT 1192
Query 1311 CTGAATATGTTTACATCTCGGACATCCTCCGAGCCTCAGATTGCCTTTCACAAGAGTCCG 1370
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1193 CTGAATATGTATACATCTCGGACATCCTCCGAGCCTCAGATTGCCTTCCACAAGAGTCCG 1252
Query 1371 ACATCTTCTCGTTCCTGGAAAAGCAGCAATACCTCAAAGGTAAATGCGCCTCCATAGCCG 1430
||| |||||| || |||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1253 ACAGCTTCTCCTTTCTGGAAAAGCAGCAATACCTCAAAGGAAAATGCGCCTCCAGAGCCG 1312
Query 1431 CAGCTCAGGAAAGACGGCTCATTTTCGACGCAGTGCAAGAGATTGTGGCGCGGAGAAGGA 1490
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1313 CAGCTCAGGAAAGACGCCTCATCTTCGACGCAGTGCAAGAGATTGTGGCGCGGAGAAGGA 1372
Query 1491 GCTTGCCCCCGTGGAGGATGGT-GGCAGAGGCTGATAA---GATGCAAGTGATCTGGTCT 1546
||||||||||||||| |||||| || |||||||||||| |||||||||||||||||||
Sbjct 1373 GCTTGCCCCCGTGGATGATGGTAGG-AGAGGCTGATAATAAGATGCAAGTGATCTGGTCT 1431
Query 1547 GAATTTCAAAAGATAAGAGAGAAAAAGTCGTCCACAGATGAAGAGGAGGACCTTGTGGGA 1606
|||||||| ||||||||||| |||||||||||||| || ||||| || ||||||||||
Sbjct 1432 GAATTTCAGAAGATAAGAGACAAAAAGTCGTCCACGGAGGAAGATGA---CCTTGTGGGA 1488
Query 1607 TACGTGTGCGGGGTCCTCGGAAGGGATCTATCAGAGGACCGATGGCGAGATTGTCAGGTG 1666
||||||||||||||||||||||| ||| | || ||||||||||||||||||| |||||||
Sbjct 1489 TACGTGTGCGGGGTCCTCGGAAGAGATTTGTCGGAGGACCGATGGCGAGATTTTCAGGTG 1548
Query 1667 GAGATGTCAGAAGCGGTTCTTGACATCGAACGCCTTGTATTCAAAGATCTCATCGGTGAA 1726
|||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||
Sbjct 1549 GAGATGTCAGAAGCAGTTCTTGACGTCGAACGCCTCATATTCAAAGATCTCATCGGCGAG 1608
Query 1727 ACCATACGCCATTTAGCTGCTCTTAACAGGTCCGACTCGCTGCGTAGGAGGCTGCTCTTT 1786
||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 ACCATACGCCAGTTGGCTTTTCTTAACAGGTCCGACTCGCTGCGTAGGAGGCTGCTCTTT 1668
Query 1787 TGATACAAACAAACTAGACTAAAATATCTGACCCA 1821
||||| ||| | |||||||||| | |||||||||
Sbjct 1669 TGATATAAA-A--CTAGACTAAATTCTCTGACCCA 1700
Score = 531 bits (287), Expect = 1e-149
Identities = 484/569 (85%), Gaps = 54/569 (9%)
Strand=Plus/Plus
Query 311 CAACAACGATCTTCTTCTTCTAGGTCTTCGTCGTC-A--CCTTGGAGGTTCTCTAAAGAA 367
|||||| |||||||||||||| ||||| || || | |||||||||||||||||||||
Sbjct 247 CAACAAAGATCTTCTTCTTCTTCTTCTTCTTCCTCTAGGCCTTGGAGGTTCTCTAAAGAA 306
Query 368 GCTCCTCGGCTCTCCCTCGATAGCAGAGCCGTCGTGGATGCCAAGGGGTGCCTCAAACCC 427
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 307 GCTCCGAGGCTCTCCCTCGATAGCAGAGCCGTCGTGGATGCCAAGGGCTGCCTCAAACAC 366
Query 428 AGACAGATCCGACCCGATGC-G--GA---TGAGAACCTGCGAGGCTCACCCAGCGTGATC 481
|||||||||||| ||||||| | || |||||||| ||| ||||||||||| ||||||
Sbjct 367 AGACAGATCCGAGCCGATGCGGTTGAGGCTGAGAACCAGCGCGGCTCACCCAGTGTGATC 426
Query 482 GCACGGCTCATGGGATTGGAGCCATTGCCCC-------TC-C-AGAGATCTGCATCCGAG 532
|||||||||||||||||||||||||| |||| || | |||||||||||||||||
Sbjct 427 GCACGGCTCATGGGATTGGAGCCATTTCCCCAACAGCCTCTCCAGAGATCTGCATCCGAG 486
Query 533 TCCAGGGTCACCAGAGACTACTTATTTGACTTTCAAGATGACAAGGGAGCTG---AAGAT 589
||||||||||||||||||||| ||||||||||||| |||||||||||||| | |||||
Sbjct 487 TCCAGGGTCACCAGAGACTACATATTTGACTTTCACGATGACAAGGGAGCAGCTCAAGAT 546
Query 590 CCGGCGGCATTTATGAA-GCC--AGCCCGAGCTCCACCCTTAGTAGTACGCCGAAAGAGT 646
||||| || ||| ||| ||| ||||| | | ||| ||| |||||||||||||||||||
Sbjct 547 CCGGCTCCAATTAGGAACGCCCGAGCCC-A-C-CCAACCTCAGTAGTACGCCGAAAGAGT 603
Query 647 TTCTTTGATTCCCCGGAGCCAAGGCAGTGTGGCCGCGATTTGGAGAGAGTTTCCAAAATG 706
|||||||||||| || | | | | | || ||| | || |||||||||||
Sbjct 604 TTCTTTGATTCC--GGTG--ATTTC--T-T--CC-CGA---G-AG----TTTCCAAAATG 645
Query 707 AGTGGATTTGACGACGCTCCCCCGACCGATCTGGAAACCCTCAAGCAGCTTCTCGAAGCT 766
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 646 AGTGGATTTGACG-C--TCCCCCGACCGATCTGGAAACCCTCAAGCAGCTTCTCGAAGCT 702
Query 767 CTCAGGCTCAAAGGACTCTTGCACTC-T-T-CACACAAACATGAGAGCAGGAATCTCGTC 823
|| ||||||||||||||||||||||| | | ||| ||||||| |||||||||||||||||
Sbjct 703 CTTAGGCTCAAAGGACTCTTGCACTCGTCTTCACTCAAACATCAGAGCAGGAATCTCGTC 762
Query 824 TTCGACCATCATCAATCTCCGATCAAACC 852
|||||||||||| ||||||||||||||
Sbjct 763 TTCGACCATCAT---TCTCCGATCAAACC 788
Score = 244 bits (132), Expect = 2e-63
Identities = 176/196 (90%), Gaps = 8/196 (4%)
Strand=Plus/Plus
Query 1 CAGAGAAGCGGGAGAAGAGTGCTGCAGCAACAGGAGGGAA-ATGGAGAAAGT-G--AAAG 56
||||||||||||||||||||| ||||||| || || || | | ||||| | | ||||
Sbjct 1 CAGAGAAGCGGGAGAAGAGTG-TGCAGCAGCAACAGCCAACA-GAAGAAAATGGCAAAAG 58
Query 57 AGCAAGATCTCGAGAAGCAAATCGGCGGTTGCATGGCCGGCTTCTTCAACATCTTCGATC 116
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 59 AGAAAGATCTGGAGAAGCAAATCGGCGGTTGCATGGCCGGCTTCTTCAACATCTTCGATC 118
Query 117 GACCCAATCTCCTCTCTCCTAATAAGCGTCTCTCTTCCTCTCCCAGCGCTGAATCTGAAT 176
| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 GCCCCAGTCTCCTCTCTCCTAATAAGCGTCTCTCTTCCTCTCCGAGCGCTGAATCTGAAT 178
Query 177 CTGCCTCTGGG-AGGA 191
||||||| ||| ||||
Sbjct 179 CTGCCTC-GGGTAGGA 193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93724417515
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5