BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486853
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1467 0.0
AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protei... 331 1e-89
> AT3G63450.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:23426913-23429154 REVERSE LENGTH=1687
Length=1687
Score = 1467 bits (794), Expect = 0.0
Identities = 1160/1324 (88%), Gaps = 76/1324 (6%)
Strand=Plus/Plus
Query 1 ATGGATGTGTACGAAGCAACTAGGGTCGTGCTCTCTAGAATCCAGAGCTTAGACCCAGCT 60
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 291 ATGGATGTGTACGAAGCAACTAGGATCGTGCTCTCTAGAATCCAGAACTTAGACCCAGCT 350
Query 61 AATGCTTCCAAGATCATGGGCCTCCTCCTCCTTCAGGATCACGGAGAGAAGGAGATGATA 120
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||
Sbjct 351 AATGCTTCCAAGATCATAGGTCTTCTCCTCCTTCAGGATCACGGTGAGAAGGAGATGATA 410
Query 121 AGGTTAGCTTTCGGGCCTCAGAATCTACTTCATTCTGTCATAGCCAAGGCCAAGAAA-GA 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||
Sbjct 411 AGGTTAGCTTTCGGGCCTCAGAATCTCCTTCATTCTGTCATAGCCAAGGCCAA-AAAGGA 469
Query 180 CCTCGACGAGCGGCTTTCTTTCTTGGCTCCGAGAACCGCCGGTTGCGTTTCCG-ACGATT 238
|||||| |||||||||||||||||| |||||||||||||| | | ||| | |||||
Sbjct 470 CCTCGAAGAGCGGCTTTCTTTCTTGACTCCGAGAACCGCC-GAAGATTTTGAGTCCGATT 528
Query 239 TAGGGTTCGGATGGGGACAGTGCTC-CTACGCTGACTGCAAATTCCACATCCATCATCAA 297
|||||||||||||||| || | | | | | | ||| || | || | |
Sbjct 529 TAGGGTTCGGATGGGGTCA---C-CGCAAAG-AG-GTGC---TT----A--GGTC--C-A 570
Query 298 AGCTCTGTTCCTCCGAGACTTGCCCATCAGTTCACCGGTTATCCATTCTCCCCCAAAGGT 357
| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 571 A-CTCTGTTCCGCCGAGACTTGCCAATCAGTTCACCGGTTATCCATTCTCCCCCAAAGGT 629
Query 358 GTTAACTTGCAGCAGAGTGAAGCCAAAAGCAGAGCTGCTGCTCTGATGATGGGCGATGAC 417
|| |||||||| |||||||||||| || |||||||||||| |||||||||||||||||
Sbjct 630 GTCAACTTGCAACAGAGTGAAGCC-CAA--AGAGCTGCTGCTTTGATGATGGGCGATGAC 686
Query 418 TTGCACAAGTTGGGAAGATGGAGGCCAGAGAGGATCGACCTTTCCGCCATGGCCTGCCCG 477
|||||||| ||||||| |||||||||||||||||||||||| || |||| ||||||||||
Sbjct 687 TTGCACAAATTGGGAATATGGAGGCCAGAGAGGATCGACCTCTCGGCCACGGCCTGCCCG 746
Query 478 GCTTCCAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAAGAAGATGTT 537
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 GCGTCTAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAAGAAGATGTT 806
Query 538 TCCGACTACTTCAGCATGGTGGTGCAGTACTTTGGGCCAGTTCAGGACGTGAGGATACCG 597
||||||||||| || || | | |||||||||||||||||||||||||||||
Sbjct 807 TCCGACTACTT---CA-----GTAC-G---TTTGGGCCAGTTCAGGACGTGAGGATACCT 854
Query 598 TACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGATACGGTGAAGAGC 657
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 855 TACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGAGACTGTGAAGAGC 914
Query 658 ATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTGATTCCAGGGTTCTTGTTAAGCCTTAC 717
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 915 ATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTCATTCCAGGGTTCTTGTTAAGCCTTAC 974
Query 718 AAGGAGAAAGGCAAAGTCCCAGAC----A-A-G--T-----A--CAGGGACATTATGGAT 762
|||||||||||||||||||||||| | | | | | ||||||||||||||||
Sbjct 975 AAGGAGAAAGGCAAAGTCCCAGACAAGTACAGGACTAAGCCATCCAGGGACATTATGGAT 1034
Query 763 TTCCAGCTTGGAGGGAGGGCTTTTCATGACAACACCCAAGATCTGTTGTGGAAAAGGAGG 822
||||||||||| |||||||||||||||| |||||||| ||||||||||||||
Sbjct 1035 TTCCAGCTTGGGGGGAGGGCTTTTCATG---------AAGATCTGCTGTGGAAAAGGAGG 1085
Query 823 TTTGGAGAGCGAGCTCTTGAGCTTCAGAGCACAAGGCTGATGAATCTGAAGCTTCTAGAC 882
|||| ||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||
Sbjct 1086 TTTGAAGAACGAGCTCTTGAGCTGCAGAGCACAAGGCTGATGAATCTGCAGCTTCTCGAC 1145
Query 883 GTCAAGAAACAATTTCAACTCAGTTTCGACCAAACA-T--TTGTTTCTCCACGACTAGTT 939
||| ||||||| |||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 1146 GTCGAGAAACAGTTTCAACTCAATTTCGACCAAACACTACTTGTTTCTCCACGACTAGTT 1205
Query 940 TCAAGA-AACCAGAGAGTGTGTACCAAAGAGAACGATGAGGATGCAATCAAACTTCCAGA 998
|||| | || ||||||||||| || |||||||| ||||||||| ||||||||||||||||
Sbjct 1206 TCAA-ACAATCAGAGAGTGTGCACAAAAGAGAATGATGAGGATACAATCAAACTTCCAGA 1264
Query 999 GAGCTTGGAGGATGATAGGCTGGTAGATATCCCATTTGCATCACCCACACAGCATTGTCT 1058
|||||||||||||||||||||||| |||| |||| ||| |||||| | ||| |||| |||
Sbjct 1265 GAGCTTGGAGGATGATAGGCTGGTGGATAGCCCAATTGTATCACCGAAACACCATTTTCT 1324
Query 1059 CGAGTTTGAAG-AGTGTGCAGACACAAACGGTTCTCGCTTGTCGTCGCCGTATTTTGATG 1117
||||| || | || |||||| ||||| ||||| ||||||||||||| | |||||||
Sbjct 1325 CGAGTGTGGGGTAGC-TGCAGAAACAAAGGGTTCAGGCTTGTCGTCGCCATCTTTTGATC 1383
Query 1118 ACGATGAGTCTAGTACAAGTACATTGAAAGA-CTCTCTCATGTCCCTCAACTGCCAAATA 1176
| ||||||||||||||| ||||||||||||| | |||||| |||| | || ||||||||
Sbjct 1384 AGGATGAGTCTAGTACAGGTACATTGAAAGAGC-CTCTCAAGTCCTTGAAGTGCCAAATG 1442
Query 1177 CCGAGGTTATCAATGATGGGGATATCACAGGGCAGCAGCGGAGCAACAACATGTCGCGTT 1236
|||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||
Sbjct 1443 CCGAGGTTATCAATGATGGGGATAACACAGGGCAGCAGCGGACCAACAACGTGTCGCGTT 1502
Query 1237 GGGATCTAACCCCATTCAAAACAACTAACCAGT--T-G-AAGAGAAGATTAACCACAAAA 1292
||||||||| ||||||||||||| ||||||||| | | |||||||||||||||| ||||
Sbjct 1503 GGGATCTAAACCCATTCAAAACAGCTAACCAGTGGTAGGAAGAGAAGATTAACCAAAAAA 1562
Query 1293 AAGG 1296
||||
Sbjct 1563 AAGG 1566
Score = 87.9 bits (47), Expect = 2e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 1295 GGGGGAAGGTTGTTTCTTGTACCATTCATTAAACAAGAGTGTTAGGAAATGAGTCC 1350
|||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1625 GGGGGAAGGTTGGTTGTTGTACCATTCATTAAACAAGAGTGTTAGTAAATGAGTCC 1680
> AT3G51950.1 | Symbols: | Zinc finger (CCCH-type) family protein
/ RNA recognition motif (RRM)-containing protein | chr3:19277778-19281346
REVERSE LENGTH=2540
Length=2540
Score = 331 bits (179), Expect = 1e-89
Identities = 331/402 (82%), Gaps = 20/402 (5%)
Strand=Plus/Plus
Query 352 AAAGGTGTTAACTTGCAGCAGAGTGAAG-CCAAAAGCAG-AGCTGCTGCTCTGATGATGG 409
|||||||||||||||||||| | || | | |||| || ||||||||| ||||||| |
Sbjct 1179 AAAGGTGTTAACTTGCAGCAAAACGATGTTC-AAAG-AGCTGCTGCTGCTTTGATGATAG 1236
Query 410 GCGATGACTTGCACAAG-TTGGGAAGATGGAGGCCAGAGAGGATCGACCTTTCCGCCATG 468
| ||||| ||||| ||| || ||||||||||| || || ||||| || ||||| || |||
Sbjct 1237 GAGATGAATTGCAGAAGCTT-GGAAGATGGAGACCTGAAAGGATTGATCTTTCTGCTATG 1295
Query 469 GCCTGCCCGGCTTCCAGACAGATCTATCTGACTTTCCCGGCTGACAGTATCTTCAGGGAA 528
|| || || ||||| ||||||||||||||||| ||||| || ||||||| ||||||||
Sbjct 1296 GCTTGTCCAGCTTCAAGACAGATCTATCTGACATTCCCTGCCGACAGTAGGTTCAGGGAG 1355
Query 529 GAAGATGTTTCCGACTACTTCAGCATGGTGGTGCAGTAC-TTTGGGCCAGTTCAGGACGT 587
|||||||| ||| | | || | | | | |||||| ||||| |||||||| || ||
Sbjct 1356 GAAGATGTGTCC-A--A-TT-A-C----T--T-CAGTACTTTTGGACCAGTTCAAGATGT 1402
Query 588 GAGGATACCGTACCAGCAGAAGAGGATGTTTGGGTTCGTGACCTTCATGTACCCAGATAC 647
||||||||| || ||||| ||||| |||||||| || ||||| || ||||||| || ||
Sbjct 1403 GAGGATACCATATCAGCAAAAGAGAATGTTTGGTTTTGTGACATTTGTGTACCCTGAGAC 1462
Query 648 GGTGAAGAGCATTCTGGCCAAAGGGAACCCTCACTTTGTGTGTGATTCCAGGGTTCTTGT 707
|| ||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 1463 TGTTAAGAGCATTCTCGCCAAAGGGAATCCTCACTTTGTGTGTGATTCCAGAGTTCTTGT 1522
Query 708 TAAGCCTTACAAGGAGAAAGGCAAAGTCCCAGACAAGTACAG 749
||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1523 CAAGCCTTACAAGGAGAAAGGCAAAGTCCCTGACAAATACAG 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5