BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486857
Length=1786
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63470.1 | Symbols: scpl40 | serine carboxypeptidase-like 40... 2868 0.0
AT3G63480.1 | Symbols: | ATP binding microtubule motor family ... 283 4e-75
> AT3G63470.1 | Symbols: scpl40 | serine carboxypeptidase-like
40 | chr3:23438474-23441060 FORWARD LENGTH=1794
Length=1794
Score = 2868 bits (1553), Expect = 0.0
Identities = 1723/1802 (96%), Gaps = 24/1802 (1%)
Strand=Plus/Plus
Query 1 ATTTAACTGTCTCTTCTTcaaaaccaaaaccaaaa-caaaa------a-----aacCTTC 48
||||||||||||||||||||||||||||||||||| ||||| | ||| |
Sbjct 1 ATTTAACTGTCTCTTCTTCAAAACCAAAACCAAAACCAAAACCTTCTATTGTTTCCCTCC 60
Query 49 TA--CTATAACTCAGT-GACATAAGAGAATGAGGAAAGGGCAGGGCTACTCCTACTCTGA 105
| |||||| ||| | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 61 CACGCTATAATTCA-TAGACATAAGAGAATGAGGAAAGGACAGGGCTACTCCTACTCTGT 119
Query 106 AATCGCATCGGTGTTGGTGTTACTGTGTGTGGTGGTGTCTCGAATCGAATGCAGCAGCCA 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AATCGCATCGGTGTTGGTGTTACTGTGTGTGGTGGTGTCTCGAATCGAATGCAGCAGCCA 179
Query 166 AGTGCACGCCCTGAGCCGTCTGTACCTGTCGAAGCGAGGGGTTGGTGGTTCGTCCACCAT 225
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 180 AGTGCACGCCCTGAGCCGTCTTTACCTGTCTAAGCGAGGGGTTGGTGGTTCGTCCACCAT 239
Query 226 GGACACAAGCCATTTTAAGGCTGTCAAGGATTTGAAACCGTCTTCGCTGCGGAGTGTTGC 285
||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||
Sbjct 240 GGACACAAGCCATTTCAAGGCGGTTAAGGATTTGAAACCGTCTTCGCTGCGGAGTGCTGC 299
Query 286 TAATCAGGAGGAGTTAAGAGAGAGAGATCTGATACGGAGATTGCCCGGACAGCCTCCCGT 345
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TAATCAGGAGGGGCTAAGAAAGAGAGATCTGATACGGAGATTGCCCGGACAGCCTCCCGT 359
Query 346 GAGTTTCGATCAGTACGGCGGCTATGTCACCGTCAACGAATCCG-CGGGCCGTTCCTTCT 404
|||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |
Sbjct 360 TAGTTTCGATCAGTACGGCGGCTATGTTACCGTCAACGAATCCGCCGGG-CGTTCCTTTT 418
Query 405 TCTACTATTTCGTGGAAGCCTCCAACTCCAAGTCTAAAGATTCTTCTCCTCTACTTCTCT 464
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||
Sbjct 419 TCTACTATTTCGTGGAAGCCT----CT--AAGTCTAAAGATTCTTCTCCTCTGCTTCTCT 472
Query 465 GGCTCAACGGCGGACCGGGATGCTCGTCACTGGCGTATGGAGCACTACAAGAGCTTGGGC 524
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 473 GGCTCAACGGCGGACCGGGATGCTCGTCACTGGCGTATGGAGCATTACAAGAGCTTGGGC 532
Query 525 CGTTCCGAGTGCACAGCGACGGCAAAACGCTTTTTAGAAACCGATATGCATGGAACAATG 584
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 CGTTCAGAGTACACAGCGACGGCAAAACGCTTTTTAGAAACCGATATGCATGGAACAATG 592
Query 585 CTGCGAACGTCTTGTTCTTAGAATCGCCGGCAGGAGTGGGGTTCTCGTACACCAACACAA 644
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 593 CTGCGAATGTCTTGTTCTTAGAATCGCCGGCGGGAGTGGGGTTCTCGTACACCAACACGA 652
Query 645 CGTCGGACCTGGAGAAGCATGGTGACAGGAATACCGCGGCTGATAACTACATCTTCCTGG 704
||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||
Sbjct 653 CGTCGGACCTGGAGAAGCACGGGGACAGGAATACCGCAGCTGATAACTACATCTTCCTGG 712
Query 705 TTAAGTGGCTGGAGAGGTTCCCGGAGTACAAAGGCAGGGACTTGTACATAGCCGGTGAGA 764
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 713 TTAACTGGCTGGAGAGGTTCCCGGAGTACAAAGGCAGGGACTTGTACATCGCCGGTGAGA 772
Query 765 GCTATGCCGGCCACTATGTTCCACAACTTGCCCATACTATCCTTCTCCATCACCGGAGCT 824
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 773 GCTATGCCGGCCACTATGTTCCGCAACTTGCCCATACTATCCTTCTCCATCACCGGAGCT 832
Query 825 CCCTCAATCTCAAGGGCATTCTGATAGGAAATGCGGTGATCAACGACGAGACCGACTTGA 884
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TCTTCAATCTCAAGGGCATTCTGATAGGAAATGCGGTGATCAACGACGAGACCGACTTGA 892
Query 885 TGGGTATGTACGACTTTTTCGAGAGTCATGCTTTGATCTCCGAAGATTCTTTGGCTAGAC 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 TGGGTATGTACGACTTTTTCGAGAGTCATGCTTTGATCTCCGAAGATTCTTTGGCTAGAC 952
Query 945 TAAAGAACAACTGCGATCTCAAGACGGAGTCTGCGAGTGTAATGACTGAGGAGTGCGCGG 1004
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TCAAGAGCAACTGCGATCTCAAGACGGAGTCTGCGAGTGTAATGACTGAGGAGTGCGCGG 1012
Query 1005 TGGTGTCCGACCAAATAGACATGGACACATATTACCTCGACATCTACAACATATACGCTC 1064
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1013 TGGTGTCCGACCAAATAGACATGGATACATATTACCTCGACATCTACAACATATACGCTC 1072
Query 1065 CCTTGTGCCTCAACTCCACGCTCACTCACAGGCCCAAGCGAGGAACCACAATAAGGGAGT 1124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1073 CCTTGTGCCTCAACTCCACGCTCACTCGCAGGCCCAAGCGAGGAACCACAATAAGGGAGT 1132
Query 1125 TTGATCCCTGCAGTGACCATTACGTGCAGGCCTACCTGAACAGACCTGAAGTCCAAGCGG 1184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TTGACCCCTGCAGTGACCATTACGTGCAGGCCTACCTGAACAGACCTGAAGTCCAAGCGG 1192
Query 1185 CCCTGCACGCAAACGCTACGAAGCTGCCTTACGAGTGGCAGCCGTGCAGCAGTGTGATAA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 CCCTGCACGCAAACGCTACGAAGCTGCCTTACGAGTGGCAGCCGTGCAGCAGTGTGATAA 1252
Query 1245 AGAAGTGGAACGACAGTCCTACCACAGTGATTCCTCTCATCAAGGAGCTGATGGGTCAGG 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 AGAAGTGGAACGACAGTCCTACCACAGTGATTCCTCTCATCAAGGAGCTGATGGGTCAGG 1312
Query 1305 GCGTCCGCGTCTGGGTGTTCAGCGGAGACACAGACGGGAGAATTCCAGTGACGTCCACCA 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 GCGTCCGCGTCTGGGTGTTCAGCGGAGACACAGACGGGAGAATTCCAGTGACGTCCACCA 1372
Query 1365 AATACTCCCTCAAGAAGATGAATCTGACGGCCAAAACGGCTTGGCATCCATGGTACCTTg 1424
||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
Sbjct 1373 AATACTCCCTCAAGAAGATGAATCTAACGGCCAAAACGGCCTGGCATCCATGGTACCTAG 1432
Query 1425 ggggggAGGTGGGTGGATACACAGAGGAGTACAAAGGGAAGTTGACATTTGCCACCGTGA 1484
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 1433 GGGGTGAGGTGGGTGGATACACAGAGGAGTACAAAGGGAAATTGACATTTGCCACAGTGA 1492
Query 1485 GAGGGGCAGGCCATCAAGTTCCCAGCTTCCAGCCAAAACGCTCTCTTTCACTCTTCATTC 1544
||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1493 GAGGGGCTGGTCATCAAGTTCCCAGCTTCCAGCCAAAGCGCTCTCTTTCACTCTTCATTC 1552
Query 1545 ACTTCCTCAATGACACTCCTCTCCCTGACACCTCTCGTTACTAAATATTCTATCTGAGAT 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553 ACTTCCTCAATGACACTCCTCTCCCTGACACCTCTCGTTACTAAATATTCTATCTGAGAT 1612
Query 1605 TGTAATTTCTCTCTTATTTAGCTTTTATTCCTCCTCCCATCCATTCTTTATCTACTATTT 1664
|||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1613 TGTAATTTCTCTCTTAATTAGCTTTTATTCATCCTCCCATCCATTTTTTATCTACTATTT 1672
Query 1665 CATTACATAACTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGCAACTT 1724
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1673 CATTACATACCTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGAAACTT 1732
Query 1725 ATCTCTTTACCATCTACTTGTCCACATCTTCTACATTACCAAGACAGTATATTCATATTA 1784
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1733 ATCTCTTTACCATCTACTTGTCCACATCTTCTACATTACCAAGATAGTATATTCATTTTA 1792
Query 1785 TC 1786
||
Sbjct 1793 TC 1794
> AT3G63480.1 | Symbols: | ATP binding microtubule motor family
protein | chr3:23440887-23444006 REVERSE LENGTH=1684
Length=1684
Score = 283 bits (153), Expect = 4e-75
Identities = 167/174 (96%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 1613 CTCTCTTATTTAGCTTTTATTCCTCCTCCCATCCATTCTTTATCTACTATTTCATTACAT 1672
|||||||| ||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1684 CTCTCTTAATTAGCTTTTATTCATCCTCCCATCCATTTTTTATCTACTATTTCATTACAT 1625
Query 1673 AACTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGCAACTTATCTCTTT 1732
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1624 ACCTTTGAATGTTAATATCTGTTTTGCTCTCACGACCTAAAAAGAGAAACTTATCTCTTT 1565
Query 1733 ACCATCTACTTGTCCACATCTTCTACATTACCAAGACAGTATATTCATATTATC 1786
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1564 ACCATCTACTTGTCCACATCTTCTACATTACCAAGATAGTATATTCATTTTATC 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88352959200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5