BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486864
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63510.1 | Symbols: | FMN-linked oxidoreductases superfamil... 2034 0.0
> AT3G63510.1 | Symbols: | FMN-linked oxidoreductases superfamily
protein | chr3:23450536-23452794 FORWARD LENGTH=1378
Length=1378
Score = 2034 bits (1101), Expect = 0.0
Identities = 1249/1318 (95%), Gaps = 20/1318 (2%)
Strand=Plus/Plus
Query 1 AACCAACTGTTTCATTATCTTCTCCAATCCTCCTAATGTGGTGCCTACCATCTGTTCGAC 60
||| ||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct 19 AACAAACGGTTTCATTATCTTCTCCAAT--TCCAAATGTGGTGTCTACCATCTGTTCGAC 76
Query 61 CAAATGTCACTGAGATGTTCTTCAAGTCCCCAATGCTCAAACCCACTGCTAGATTCTCCA 120
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 77 CAAATGTCTCTGAGATGTTCTTCAAGTCCCCAATGCTCAAACCCACTGCTAGATTCTCCT 136
Query 121 CCACTTCTTCTCCCTATCTTCCTCCTTCCTTCAGCGTCGCCCCGATGATGGAGTGGACAG 180
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 137 CCACTTCGTCTCCCTATCTTCCTCCTTCCTTCAGCGTCGCCCCGATGATGGATTGGACAG 196
Query 181 ATAATCATTACCGGACGCTTGCTCGTCTCATAACAAAGCATGCTTGGCTTTACACCGAAA 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 197 ATAATCATTACCGGACGCTTGCTCGTCTCATAACAAAGCACGCTTGGCTTTACACTGAAA 256
Query 241 TGATTGCCGCTGAAACTCTTATTCACCAGCAGGCCAATTTGGACAGGTTCTTAGCATTTT 300
||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||| ||||
Sbjct 257 TGATTGCAGCTGAAACCCTTGTTCACCAGCAGACCAATTTGGACAGGTTCTTAGCGTTTT 316
Query 301 CTCCTCAACAACATCCTATTGTTCTTCAACTCGGTGGTAGCAATGTGGAAAACCTTGCAA 360
|||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 317 CTCCCCAACAACATCCTATTGTTCTCCAACTTGGTGGTAGCAATGTGGAAAACCTTGCAA 376
Query 361 AGGCTGCTAAGCTTTCTGATGCTTACGGATACGACGAAATTAATCTCAACTGCGGGTGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 AGGCTGCTAAGCTTTCTGATGCTTACGGATACGACGAAATTAATCTCAACTGCGGGTGCC 436
Query 421 CCAGTCCTAAGGTAGCCGGCCATGGTTGCTTTGGTGTTAGCCTCATGCTCAAACCCAAGC 480
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||
Sbjct 437 CCAGTCCTAAGGTAGCCGGTCATGGATGCTTTGGTGTTAGCCTCATGCTCAAACCTAAGC 496
Query 481 TTGTTGGAGAGGCAATGTCTGCCATTGCTGCCAATACCAACGTCCCTGTTACTGTGAAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 TTGTTGGAGAGGCAATGTCTGCCATTGCTGCCAATACCAACGTCCCTGTTACTGTGAAAT 556
Query 541 GTCGAATTGGTGTAGACGATCATGATTCGTATGATGAGCTCTGTGACTTTATCTACAAGG 600
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 557 GTCGAATTGGTGTAGACAATCATGATTCGTATGATGAGCTCTGTGACTTTATCTACAAGG 616
Query 601 TTTCTACTCTATCACCTACCAGGCATTTCATTGTACATTCTCGGAAGGCACTGCTCGGTG 660
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 617 TTTCTACTCTATCACCTACCAGACATTTCATTGTACATTCACGCAAGGCACTGCTCGGTG 676
Query 661 GGATAAGCCCTGCTGCTAACCGGACAATTCCTCCTCTAAAGTATGAGTATTTCTATGCCC 720
||||||||||||||| |||||||| ||| || ||||||||||||||||||| ||||||||
Sbjct 677 GGATAAGCCCTGCTGATAACCGGAGAATCCCACCTCTAAAGTATGAGTATTACTATGCCC 736
Query 721 TCGTGCGTGACTTCCCGGATTTGAGATTCACTATTAATGGTGGCATTACTTCTGTTTCGA 780
||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 737 TCGTGCGTGACTTCCCGGACTTGAGATTCACTATTAATGGAGGCATTACTTCTGTTTCAA 796
Query 781 AGGTAAACGCTGCACTGAAGGAAGGAGCTCATGGAGTCATGGTAGGACGTGCTGCATACA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 AGGTAAACGCTGCACTGAAGGAAGGAGCTCATGGAGTCATGGTAGGACGTGCTGCATACA 856
Query 841 ACAACCCATGGCAGACGCTAGGACATGTTGACACTGCAGTTTATGGTGTACCAAGCAGTG 900
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 857 ACAACCCATGGCAGACGCTAGGACAAGTTGACACTGCAGTTTATGGTGTACCAAGCAGTG 916
Query 901 GCCTTACACGCCGACAGGTTCTTGAGCAATATCAAGTATATGGAGACTCTGTGTTAGGAA 960
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 917 GCCTTACACGCCGACAGGTTCTTGAGCAATATCAAGTATATGGAGATTCTGTGTTAGGAA 976
Query 961 TACATGGAAACGGGAGGCCTAATGTGAGGGATTTAGTGAAGCCTCTGCTAAACCTTTTTC 1020
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 977 CACATGGAAACGGGAGGCCTAATGTGAGGGATTTGGTGAAGCCTCTGCTAAACCTTTTCC 1036
Query 1021 ATTCAGAAAATGGAAATAGCTTGTGGAAGCGGAGAGCAGACGCAGCTTTCAAGCACTGCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1037 ATTCAGAAAATGGAAATAGCTTGTGGAAGCGGAGAGCAGACGCAGCTTTCAAGGAGTGCA 1096
Query 1081 GGAGTGTTGGATCGTTGCTGGAAGAAAGCTTGAGGGCGATCCCGGACTGTGTCTTAGATT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GGAGTGTTGGATCGTTGCTGGAAGAAAGCTTGAGGGCGATCCCGGACTGTGTCTTAGATT 1156
Query 1141 CACCCATATCTGGGAGTCCAGAGAGTGGAGAAGAAGATGTGTTTGCAGATGTGCACAATG 1200
||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1157 CACCCATATCTGGGAGTCCAGAGAGCGGAGACGAAGATGTGTTCGCAGATGTGCACAATG 1216
Query 1201 TATTGCCCCCACCCTACGAAGCAGCTGGAGAAGGAATCATCTTATGTGCTTAGTTAT--T 1258
||||||||||||| |||||||| |||||||| |||||||||||| |||||||| | |
Sbjct 1217 TATTGCCCCCACCATACGAAGC---TGGAGAAGAAATCATCTTATGCGCTTAGTTGTCGT 1273
Query 1259 --GTC-TCTGTG------A----CTCTGTCTATTAAAATTGTAAATTGAACGGGGCTT 1303
|| |||||| | ||||||| |||||||||||||||||||||||||||
Sbjct 1274 TTGTAATCTGTGTTTGTGATTGTCTCTGTCGATTAAAATTGTAAATTGAACGGGGCTT 1331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5