BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486866
Length=1803
Score E
Sequences producing significant alignments: (Bits) Value
AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoi... 2322 0.0
> AT3G63520.1 | Symbols: CCD1, ATCCD1, ATNCED1, NCED1 | carotenoid
cleavage dioxygenase 1 | chr3:23452911-23456078 FORWARD
LENGTH=1828
Length=1828
Score = 2322 bits (1257), Expect = 0.0
Identities = 1340/1381 (97%), Gaps = 2/1381 (0%)
Strand=Plus/Plus
Query 358 GGATGATACATGGGGTGCGCATCAAAGATGGGAAAGCTACTTATGTTTCTCGTTATGTTA 417
||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 331 GGATGATTCATGGGGTACGCATCAAAGATGGGAAAGCTACTTATGTTTCTCGATATGTTA 390
Query 418 AGACATCACGTCTTAAGCAGGAAGAGTTTTTCGGAGCTGCCAAATTCATGAAGATTGGGG 477
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 391 AGACATCACGTCTTAAGCAGGAAGAGTTCTTCGGAGCTGCCAAATTCATGAAGATTGGTG 450
Query 478 ACCTTAAAGGGTTTTTCGGATTGCTTATGGTCAATGTGCAACTGCTGAGAACGAAACTCA 537
||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||| ||||
Sbjct 451 ACCTTAAGGGGTTTTTCGGATTGCTAATGGTCAATGTCCAACAGCTGAGAACGAAGCTCA 510
Query 538 AAATATTGGACAACACTTATGGAAATGGAACTGCTAATACAGCACTCATATATCACCATG 597
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 511 AAATATTGGACAACACTTATGGAAATGGAACTGCCAATACAGCACTCGTATATCACCATG 570
Query 598 GAAAACTTCTAGCATTACAGGAGGCAGATAAGCCGTATGTCATCAAAGTTTTGGAAGATG 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 571 GAAAACTTCTAGCATTACAGGAGGCAGATAAGCCGTACGTCATCAAAGTTTTGGAAGATG 630
Query 658 GAGACCTGCAAACTCTTGGCATGATAGATTATGACAAGAGATTGACCCACTCCTTCACTG 717
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 631 GAGACCTGCAAACTCTTGGTATAATAGATTATGACAAGAGATTGACCCACTCCTTCACTG 690
Query 718 CTCACCCTAAAGTTGACCCGGTTACGGGTGAAATGTTTACATTCGGCTATTCCCATACGC 777
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 691 CTCACCCAAAAGTTGACCCGGTTACGGGTGAAATGTTTACATTCGGCTATTCGCATACGC 750
Query 778 CACCTTATCTCACATACAGAGTGATCTCGAAAGATGGCATTATGCATGACCCAGTCCCAA 837
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 751 CACCTTATCTCACATACAGAGTTATCTCGAAAGATGGCATTATGCATGACCCAGTCCCAA 810
Query 838 TTACTATATCAGAGCCTATCATGATGCATGATTTTGCTATTACTGAGACTTATGCAATCT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTACTATATCAGAGCCTATCATGATGCATGATTTTGCTATTACTGAGACTTATGCAATCT 870
Query 898 TCATGGATCTTCCTATGCACTTCAGGCCAAAGGAAATGCTGAAAGAGAAGAAAATGATAT 957
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 871 TCATGGATCTTCCTATGCACTTCAGGCCAAAGGAAATGGTGAAAGAGAAGAAAATGATAT 930
Query 958 ACTCATTTGATCCCACAAAAAAGGCTCGTTTCGGTGTTCTTCCACGCTATGCCAAGGATG 1017
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 931 ACTCATTTGATCCCACAAAAAAGGCTCGTTTTGGTGTTCTTCCACGCTATGCCAAGGATG 990
Query 1018 AACTCATGATTAGATGGTTTGAGCTTCCCAACTGCTTTATTTTCCACAACGCCAATGCTT 1077
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AACTTATGATTAGATGGTTTGAGCTTCCCAACTGCTTTATTTTCCACAACGCCAATGCTT 1050
Query 1078 GGGAAGAAGAGGATGAAGTCGTCCTCATCACTTGTCGTCTTGAGAATCCAGATCTTGACA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GGGAAGAAGAGGATGAAGTCGTCCTCATCACTTGTCGTCTTGAGAATCCAGATCTTGACA 1110
Query 1138 TGGTCAGTGGGAAAGTGAAAGAAAAACTCGAAAATTTTGGCAACGAACTGTACGAAATGA 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGGTCAGTGGGAAAGTGAAAGAAAAACTCGAAAATTTTGGCAACGAACTGTACGAAATGA 1170
Query 1198 GGTTCAACATGAAAACGGGCTCAGCTTCTCaaaaaaaaCTATCGGCATCTGCGGTTGATT 1257
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1171 GATTCAACATGAAAACGGGCTCAGCTTCTCAAAAAAAACTATCCGCATCTGCGGTTGATT 1230
Query 1258 TCCCCAGAATCAACGAGGGCTACACCGGAAAGAAACAGAGATATGTATATGGAACAATTC 1317
||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1231 TCCCCAGAATCAATGAGTGCTACACCGGAAAGAAACAGAGATACGTATATGGAACAATTC 1290
Query 1318 TGGACAGTATCGCAAAGGTTACCGGAATTATCAAGTTTGATCTGCATGCAGAAGCTGAGA 1377
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1291 TGGACAGTATCGCAAAGGTTACCGGAATCATCAAGTTTGATCTGCATGCAGAAGCTGAGA 1350
Query 1378 CAGGGAAAAGAATGCTGGAAGTAGGAGGCAATATCAAAGGAATATATGACCTGGGACAAG 1437
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1351 CAGGGAAAAGAATGCTGGAAGTAGGAGGTAATATCAAAGGAATATATGACCTGGGAGAAG 1410
Query 1438 GCAGATATGGTTCAGAGGCTATTTATGTCCCGCGTGAGGCAGCAGAAGAAGACGACGGTT 1497
|||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 1411 GCAGATATGGTTCAGAGGCTATCTATGTTCCGCGTGAGACAGCAGAAGAAGACGACGGTT 1470
Query 1498 ACTTGATATTCTTTGTTCATGATGAAAACACAGGGAAATCATGCGTG-CATGTGATAGAC 1556
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 1471 ACTTGATATTCTTTGTTCATGATGAAAACACAGGGAAATCATGCGTGAC-TGTGATAGAC 1529
Query 1557 GCAAAAACAATGTCGGCTGAACCTGTGGCTGTGGTGGAGCTGCCGCACAGGGTCCCATAT 1616
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1530 GCAAAAACAATGTCGGCTGAACCGGTGGCAGTGGTGGAGCTGCCGCACAGGGTCCCATAT 1589
Query 1617 GGCTTCCATGCCTTGTTTGTTACAGAGGAACAACTCCAGGAACAAACTCTTATATAAGCC 1676
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 GGCTTCCATGCCTTGTTTGTTACAGAGGAACAACTCCAGGAACAAACTCTTATATAAGCC 1649
Query 1677 AAGCTGTGTGCATACACATATAATACTTCAGAGTCAGAGATGTGGAACTGGGTGATACTG 1736
|||||||||||||| ||| |||||||||| |||||||||||||| |||| ||||||||||
Sbjct 1650 AAGCTGTGTGCATATACACATAATACTTCTGAGTCAGAGATGTGAAACTCGGTGATACTG 1709
Query 1737 A 1737
|
Sbjct 1710 A 1710
Score = 503 bits (272), Expect = 3e-141
Identities = 296/308 (96%), Gaps = 0/308 (0%)
Strand=Plus/Plus
Query 1 TTGCAGCAAAACAAACAATCATGGCGGAGAAGCTCAGTGATGGCAGCAGCATCGTCTCAG 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 10 TTGCAGCAAAACAAACAATCATGGCGGAGAAACTCAGTGATGGCAGCAGCATCATCTCAG 69
Query 61 TCAATCCTAAACCCTCCAAGGGTTTCTCCTCTAAGCTTGTTGATCTTCTGGAGAGACTTG 120
|| |||||| ||||||||||||||||||||| |||||| | |||||||| ||||||||||
Sbjct 70 TCCATCCTAGACCCTCCAAGGGTTTCTCCTCGAAGCTTCTCGATCTTCTCGAGAGACTTG 129
Query 121 TTGTCAAGCTCATGCACGATGCTTCTCTCCCTCTCCACTACCTCTCCGGCAACTTCGCTC 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 130 TTGTCAAGCTCATGCACGATGCTTCTCTCCCTCTCCACTACCTCTCAGGCAACTTCGCTC 189
Query 181 CCATCCGTGAAGAAACTCCTCCCGTCAAGGATCTCCCCGTCCATGGATTTCTTCCCGAAT 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 CCATCCGTGATGAAACTCCTCCCGTCAAGGATCTCCCCGTCCATGGATTTCTTCCCGAAT 249
Query 241 GCTTGAATGGTGAATTTGTGAGGGTTGGTCCAAATCCTAAGTTTGATGCTGTCGCTGGAT 300
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 250 GCTTGAATGGTGAATTTGTGAGGGTTGGTCCAAACCCCAAGTTTGATGCTGTCGCTGGAT 309
Query 301 ATCACTGG 308
||||||||
Sbjct 310 ATCACTGG 317
Score = 113 bits (61), Expect = 5e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1737 ATACTGCCTCGTTTCTCTTTACATATAATTACATTTCATCCTCCAATATCAACAAGGTTT 1796
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1759 ATACTGCCTGGTTTCTCTTTACATATAATTACATTTCATCCTCCAATATCAACAAGGTCT 1818
Query 1797 CTACTTT 1803
|||||||
Sbjct 1819 CTACTTT 1825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89206368465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5