BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486870
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01990.1 | Symbols: | Auxin efflux carrier family protein |... 2471 0.0
> AT5G01990.1 | Symbols: | Auxin efflux carrier family protein
| chr5:377231-379911 REVERSE LENGTH=1749
Length=1749
Score = 2471 bits (1338), Expect = 0.0
Identities = 1529/1618 (94%), Gaps = 26/1618 (2%)
Strand=Plus/Plus
Query 1 aaaaaaaGAA-GTGTGTGTGGAAG-TTGGAACGGGCTTTTGGGCTTAGAAAAGGAAAGGA 58
||||||| || || |||| ||||| || ||| |||||||||||||||||||||||||| |
Sbjct 86 AAAAAAA-AAGGTATGTGGGGAAGTTTTGAAGGGGCTTTTGGGCTTAGAAAAGGAAAGAA 144
Query 59 GTAAAGAAAGAAGCGGCGCACGTGGCAGGCAATCACGAGAATCACGAGAGAGAAACAGAG 118
|||||| |||||||||||||||||||||||| |||||||| |||||||||| | |||
Sbjct 145 GTAAAGGAAGAAGCGGCGCACGTGGCAGGCAGTCACGAGAGTCACGAGAGATCGAGAGA- 203
Query 119 AGAtctct--ctctc-t-tctc-tcAAATC---A-ATCA--TCAGAGACTCCGATTCTCT 167
|| ||| | |||| | |||| ||||||| | |||| |||||||||||||||||||
Sbjct 204 AG-TCTTTGATTCTCTTCTCTCATCAAATCAAAATATCATCTCAGAGACTCCGATTCTCT 262
Query 168 GTG-TT-TCCTCCACATTCCAACCCAAGTCCACCCTCAAAATTGTCAGAATGATTGCCCG 225
|| || |||||||| || |||||||||||||||||||||||| ||||||||||||| ||
Sbjct 263 CTGTTTCTCCTCCACTTTTCAACCCAAGTCCACCCTCAAAATTCTCAGAATGATTGCTCG 322
Query 226 GATCCTTGCCGCCTTAGCCGATTCCATGGATATTCCGGTGGCTGCC---GGTGGATCAGT 282
|||||||||||||||||||||||||||||| || |||||||||||| |||||||||||
Sbjct 323 GATCCTTGCCGCCTTAGCCGATTCCATGGAGATGCCGGTGGCTGCCGGTGGTGGATCAGT 382
Query 283 GCTGGGTACCATCAAAATCGCTGTGATGCCAATTGCCAAGGTTTTCACCATGTGCTTCTT 342
||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 383 GCTCGGTACCATCAAAATCGCTGTGATGCCAATTGCAAAGGTATTCACCATGTGCTTCTT 442
Query 343 GGGTCTTCTCATGGCCTCCAAGCACGTTAACATCTTGCCTCCCTCCGGCCGCAAACTCTT 402
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 443 GGGTCTTCTCATGGCCTCCAAGTACGTTAACATCTTGCCTCCCTCTGGCCGCAAACTCTT 502
Query 403 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCGTGCTTGATCTTTTCCCAGCTTGGACAAGC 462
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 503 GAACGGGTTGGTCTTCTCGCTTTTGCTTCCCTGCTTGATCTTTTCCCAGCTCGGACAAGC 562
Query 463 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTGAACGTCGTTCTTGGCAC 522
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 563 CGTCACTCTCCAAAAAATGCTTCAGTGGTGGTTCATTCCCGTTAACGTCGTTCTTGGCAC 622
Query 523 CATCTCTGGCTCGACAATCGGTTTCATCGTTGCTTCCATCATTCGTCCCCCTTACCCTTT 582
|||||||||||| | ||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 623 CATCTCTGGCTCCATAATCGGTTTCATCGTTGCTTCCATCGTTCGTCCGCCTTACCCTTA 682
Query 583 TTTCAAGTTTACAATCATACAAATTGGAGTTGGCAATATTGGCAATGTGCCTCTTGTTTT 642
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 683 CTTCAAGTTTACAATCATACAAATTGGAGTTGGCAACATTGGCAATGTGCCTCTTGTTTT 742
Query 643 A-TTAGCGGCTCTATGTAGGGACACCTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 701
| || |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 743 ACTT-GCGGCTCTTTGTAGGGACACTTCCAACCCTTTTGGTGACTCCGAAAAATGTAGCA 801
Query 702 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 TTGATGGCACTGCTTATATCTCCTTTGGTCAATGGGTTGGTGCCATCATCCTCTATACAT 861
Query 762 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 ATGTGTACCAGATGTTTGCTCCTCCTCCAGAAGGGTTTGATGCTGAAGAAGAAAATCTTG 921
Query 822 CTTTGAAAAACC-TTCCAGTAGATACTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 880
|||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 922 CTTT-AAAAACCCTTCCAGTAGATGCTGCTCCAGAGCAAGTCCCCTTGCTTACTCAGAAT 980
Query 881 TTTCCCAAGGACTTTTCGCCGATTCAAGATCTTTTACCTGTACAGAGCACCGAACCTAGA 940
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 981 TTTCCCAAGGACTTTTCGCCGACTCAAGATCTTTTGCCTGTACAGAGCACCGAACCTAGG 1040
Query 941 GGAAGAGTGGTTTCAAGGAAAGGCAAGATTACACAGATCTTTGTTTTCCTCTATGAGAAG 1000
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1041 GGAAGAGGGGTTTCAAGGAAAGGCAAGATTGCACAGATCTTTGTTTTCCTCTATGAGAAG 1100
Query 1001 TTGAAACTGAAGCAAATTGTCCAGCCTGCAATAGTTGCTTCGATCCTTGCCATGATACTC 1060
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1101 CTGAAACTGAAGCAAATTGTCCAGCCTGCAATTGTTGCTTCGATCCTTGCCATGATACTC 1160
Query 1061 GGTGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 GGAGCAATACCTTTCACAAAGAAGTTGATATTCACAAATGGTGCACCTCTATTCTTCTTC 1220
Query 1121 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTgggg 1180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 ACAGACAGCTGCATGATTCTTGGGGACGCGATGATACCGTGTATCTTACTGGCACTGGGG 1280
Query 1181 gggAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACGGCAGCTATT 1240
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1281 GGAAATCTCATTAACGGACCAGGAAGTTCAAAACTTGGTTTCAAGACAACAGCAGCTATT 1340
Query 1241 ATATTTGGACGGTTGGTGTTGGTGCCACCAGTAGGACTAGGAATAGTGACACTAGCAGAC 1300
||| |||||||||||||||| ||||||||||||||||||||||| |||||| ||||||||
Sbjct 1341 ATAATTGGACGGTTGGTGTTAGTGCCACCAGTAGGACTAGGAATCGTGACAGTAGCAGAC 1400
Query 1301 AAACTTGGGTTCCTTCCTGCTGACGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1360
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1401 AAACTTGGGTTCCTTCCTGCTGATGATAAGATGTTCCGATTTGTGTTACTCCTTCAGCAC 1460
Query 1361 ACAATGCCTACATCAGTACTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAG 1420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 ACAATGCCTACATCAGTGCTCTCAGGAGCTGTTGCCAACCTTAGAGGCTGTGGAAGGGAA 1520
Query 1421 TCAGCTGCTGTGCTATTCTGGGTCCACATTTTCTCCATCTTCTCAATGGCTGGATGGATA 1480
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1521 TCAGCTGCTGTGCTCTTCTGGGTCCACATTTTCGCCATCTTCTCAATGGCTGGATGGATG 1580
Query 1481 GTACTGTACATCAACATACTCTTCTGAATTCTTCTTCTTATTGACACATTCATCTGCTAC 1540
||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1581 GTACTCTACATTAACATACTCTTCTGAATTCT-CTTCTTATTGACACATTCATCTGCTAC 1639
Query 1541 TATACAATACGTCGGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1598
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 TATACAATACTTCTGTGTAAATACAGTGGCATCTCCTATGTGCCTGAACCAACCAAAA 1697
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78915256740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5