BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486872
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01970.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1832 0.0
AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5... 89.8 7e-17
> AT5G01970.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G30050.1);
Has 240 Blast hits to 236 proteins in 72 species: Archae -
0; Bacteria - 15; Metazoa - 51; Fungi - 19; Plants - 119; Viruses
- 0; Other Eukaryotes - 36 (source: NCBI BLink). | chr5:372905-374954
REVERSE LENGTH=1468
Length=1468
Score = 1832 bits (992), Expect = 0.0
Identities = 1196/1287 (93%), Gaps = 44/1287 (3%)
Strand=Plus/Plus
Query 129 CTGGCTTCTTTC--GAGCCTCGTGGGTCCGCATCCATCAATTTGTCCATATAAttttttc 186
|||||||||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 214 CTGGCTTCTTTCGAGAGCCTCGTGGGTCCGCATCCATCAATTTGTCCATA-CA-GTTTT- 270
Query 187 tttttttttATCAATCGTCTTGGAACCTAAATTATGGCGTATAGAAGAAGGCAGGGGATC 246
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 271 TTTTTTTTTATCAATCGTCTTTGAACCTAAATCATGGCGTATAGAAGAAGGCAGGGGATC 330
Query 247 GGAAAGTTTGCGACTTTCAAGGAGGAGATTGATCGGCTTCCCCCGGAAAGCATCACTGCC 306
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 331 GGAAAGTTTGCGACTTTCAAGGAGGAGGTTGATCGGCTTCCCCCGGAAAGCATCACCGCC 390
Query 307 GTCAAGGATAGATCACCGCCAGCTCGATCCTTGACATCTCCTTCATCCTTCCGTGAGTCC 366
||||| | ||| | | | || | || | || || | | ||| |||
Sbjct 391 GTCAA-G---GAT-A--G--A--TC-A-CC--GCCAGCT-C--GA----TCC-----TCC 423
Query 367 CCTGCTTTTGACCAACCCAGATCTAAGAATTTTACGACCGAGCCCAAGGGCTTGTGGGGA 426
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 424 CCTGCTTTTGACCAACCCAGATCTAAGAATTTTACGACCGAGCCAAAGGGCTTGTGGGGA 483
Query 427 GTCATAGCCCAGAAAGCAAAATCTGTTATTGAAGATGATAAATCCAGTGATAG--CT-CA 483
|||||||||||||||||||||||||||||||||||||||||||| |||||| | || ||
Sbjct 484 GTCATAGCCCAGAAAGCAAAATCTGTTATTGAAGATGATAAATCTAGTGATCGCTCTACA 543
Query 484 ACAGCTTCTCAGTCCCGGTTTTCATACCTATCAGACGAAGGGTTCAAGAAAATGGATAAT 543
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 544 ACAGCTTCTCAGTCCCGGTTTTCATACCTATCAGATGAAGGGTTCAAGAAAATGGACAAT 603
Query 544 CCCAAGCTTCGGAGAGGGCTGGATAAGCTTACATCTTCTCTTAATCAGATCGGTGACACT 603
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 CCCAAGCTTCGGAGGGGGCTGGATAAGCTTACATCTTCTCTTAATCAGATCGGTGACACT 663
Query 604 TTTGAGAAAGCCTTTGAGGATGGCCGAACACTCGTTGAGAACAAAACAGCTGATATCATC 663
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 TTTGAAAAAGCCTTTGAGGATGGCCGAACACTCGTTGAGAACAAAACAGCTGATATCATC 723
Query 664 CAGGAAACTCGAAAACTTCAAACCAGACGAAGAGGAACTGGTGGTGAAGATGAGAATCAG 723
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 724 CAGGAAACACGAAAACTTCAAACCAGACGAAGAGGAACTGGTGGTGAAGATGAGAATCAG 783
Query 724 AATCAATCTTATGGAGTAAGTAGCTCATGGAAGAAATCTCCAGAGCAGCCAATGCAGTTA 783
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 784 AATCAATCTTATGGAGTTAGTAGCTCATGGAAGAAGTCTCCAGAGCAGCCAATGCAGTTA 843
Query 784 AATCATATGGAACATGAAACTCAACTCAAGGCATCTCGCGATGTGGCGATGGCCACAGCT 843
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 844 AATCATATAGAACATGAAACTCAACTCAAGGCATCTCGCGATGTGGCGATGGCCACTGCT 903
Query 844 GCTAAAGCAAAACTACTCCTCCGTGAGCTGAAAACTGTGAAAGCAGATCTTGCATTTGCG 903
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 904 GCTAAAGCTAAACTACTCCTCCGTGAGCTGAAAACTGTCAAAGCAGATCTTGCATTTGCG 963
Query 904 AAAGAGCGTTGTGCTCAGCTTGAGGAAGAGAACAAACATCTGAGAGAGAACCACCGTGAG 963
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 964 AAAGAGCGTTGTGCTCAGCTTGAGGAAGAGAACAAACATCTGAGAGAGAGCCACCGTGAG 1023
Query 964 AAAGGAAGCAACCCTGCAGACGAAGATTTGATTCGGCTCCAGCTGGAGAGCCTACTGGCA 1023
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1024 AAAGGAAGCAACCCTGCAGACGAAGATTTGATTCGACTCCAGCTGGAGAGCCTACTGGCA 1083
Query 1024 GAGAAAGCACGGCTGGCTCATGAAAATTCAGTGTACGCGAGGGAAAACCGGTTCTTGAGG 1083
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1084 GAGAAAGCACGGTTGGCTCATGAAAATTCTGTGTATGCGAGGGAAAACCGGTTCTTGAGG 1143
Query 1084 GAGATAGTTGAATACCACCAGCTTACGATGCAGGATGTTGTGTACATAGACGAGGGCAGT 1143
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1144 GAGATAGTTGAATACCACCAGCTTACGATGCAGGACGTTGTGTACATAGACGAGGGCAGT 1203
Query 1144 GAAGAGGTGACACAAGTTTACCCTTTAGTATCCACGTTGATGACTTCTTCACCTGCAGAG 1203
||||||||||||||||||| |||||| ||||| |||||||||||||||||||| || ||
Sbjct 1204 GAAGAGGTGACACAAGTTTCCCCTTTCGTATCGACGTTGATGACTTCTTCACCCGCTGAC 1263
Query 1204 CGCCCACAGTCTCCG---AGTCAAGAGATGATTAAAGAGATTCTTGTGGTCGCTGAAGAG 1260
|| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1264 CGTTCACAGTCTCCTCCTAGTCAAGAGATGATTAAAGAGATGCTTGTGGTTGCTGAAGAG 1323
Query 1261 AGCTCTGTGTGCGCAAATGTGGTTTCAGCTTCTTGAATTCATTATTATTGCTTATATTTC 1320
||||||||||| |||| ||||||||||| |||||||||||||||||||| |||| || |
Sbjct 1324 AGCTCTGTGTGTGCAAGTGTGGTTTCAGTTTCTTGAATTCATTATTATTAATTAT-TT-C 1381
Query 1321 TTCTTGGATGAAATCAGATTGTTTTTTGCAACGGAATATAAAAGGCTATTTCAT--AT-T 1377
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |
Sbjct 1382 TTCTTGAATGAAATCAGATTGTTTTTTGCAACGGAATATAAAAGGCGATTTCATTCATAT 1441
Query 1378 -AACAAATGACATAGTATGAACATCTT 1403
||||||||||||||||||||||||||
Sbjct 1442 TAACAAATGACATAGTATGAACATCTT 1468
> AT5G01960.1 | Symbols: | RING/U-box superfamily protein | chr5:370400-372969
FORWARD LENGTH=1807
Length=1807
Score = 89.8 bits (48), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 4/65 (6%)
Strand=Plus/Minus
Query 1343 TTTTTGCAACGGAATATAAAAGGCTATTTCAT--AT-T-AACAAATGACATAGTATGAAC 1398
|||||||||||||||||||||||| ||||||| || | |||||||||||||||||||||
Sbjct 1807 TTTTTGCAACGGAATATAAAAGGCGATTTCATTCATATTAACAAATGACATAGTATGAAC 1748
Query 1399 ATCTT 1403
|||||
Sbjct 1747 ATCTT 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69126150465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5