BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486880
Length=3423
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein ki... 4669 0.0
> AT5G01890.1 | Symbols: | Leucine-rich receptor-like protein
kinase family protein | chr5:341543-345127 REVERSE LENGTH=3499
Length=3499
Score = 4669 bits (2528), Expect = 0.0
Identities = 2926/3116 (94%), Gaps = 35/3116 (1%)
Strand=Plus/Plus
Query 327 AACCTTACTTGAGCTCTG---CATCATCCATGGCCATGGCCGAGTAGCCTTCTTTCTTC- 382
|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 381 AACCTTACTTGAGCTCTGCATCATCATCCATGGCCATGGCCGACTAGCCTTCTTTCTTCG 440
Query 383 TTTGTTTGCCTTCTTCCTCTCGTCCTCT-TCCG-GAAATG--TTGTTCAACGACGCCGTT 438
|| ||| ||| ||| | || | | | | || | | ||||||||| |||||||
Sbjct 441 CTT-TTTACCTCCTTAATATC-T--T-TAAAAGCGAGAGGAAATGTTCAACGGCGCCGTT 495
Query 439 TCACTCCTCTTCCTCTT-CTT-CCTTGCCGTTTCAGCGACGGCAGACCCGACATTCAACG 496
||||| ||||||||||| ||| || | ||||||||||| |||||| |||||||||||||
Sbjct 496 TCACTACTCTTCCTCTTCCTTGCC--GTCGTTTCAGCGAGGGCAGATCCGACATTCAACG 553
Query 497 ACGACGTTTTGGGTCTCATCGTTTTCAAGGCTGGACTCGACGACCCTCTCTCTAAGCTCT 556
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 554 ACGACGTTTTGGGTCTCATCGTTTTCAAGGCCGGACTCGACGACCCTCTCTCTAAGCTCT 613
Query 557 CTTCTTGGAACTCCGAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTG 616
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 CTTCTTGGAACTCGGAAGACTACGATCCCTGCAACTGGGTCGGTTGCACATGCGACCCTG 673
Query 617 CCTCCAATCGGGTCTCGGAGCTCCGACTTGACTCCTTCTCTCTCTCCGGTCACATCGGCC 676
|| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 674 CCACCAATCGGGTCTCGGAGCTCCGCCTTGACGCCTTCTCTCTCTCCGGTCACATCGGCC 733
Query 677 GTGGCCTTCTCCGTCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCG 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GTGGCCTTCTCCGTCTCCAGTTCCTCCACACCTTGGTCCTCTCCAACAACAACCTCACCG 793
Query 737 GAACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGCGGCA 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 794 GAACCCTAAACCCCGAGTTCCCTCACCTCGGCAGCCTCCAAGTCGTCGATTTCAGTGGCA 853
Query 797 ATAGCCTCTCGGGTCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCG 856
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 ATAATCTCTCGGGTCGGATCCCAGACGGGTTCTTCGAGCAATGCGGGTCCTTGAGGTCCG 913
Query 857 TCTCCTTGGCCAACAACAAACTCACAGGTCCTCTTCCTGTCTCCCTCAGCTACTGTTCTA 916
| |||||||| |||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 914 TTTCCTTGGCTAACAACAAACTCACAGGTTCTATTCCTGTCTCCCTCAGCTACTGTTCTA 973
Query 917 CTCTCATTCATCTTAACCTCTCAAGCAATCAACTTTCCGGGAGATTACCACGAGATATCT 976
|||||| |||||||||||||||||||||||||| || ||||| || || ||||||||||
Sbjct 974 CTCTCACCCATCTTAACCTCTCAAGCAATCAACTCTCTGGGAGGTTGCCCCGAGATATCT 1033
Query 977 GGTTCCTCAAGAGCTTAAAGTCCCTTGATTTATCTGTCAATTTCCTCCAAGGAGATATCC 1036
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||
Sbjct 1034 GGTTCCTCAAGAGCTTAAAGTCCCTTGATTTCTCTCACAATTTCCTCCAAGGAGATATCC 1093
Query 1037 CCGATGGCCTCGGCGGTCTCTACGATCTCCGTC-TCTTTAACTTATCCAGAAACTGGTTT 1095
||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||
Sbjct 1094 CCGATGGCCTCGGCGGTCTCTACGATCTCCGTCATATC-AACTTATCCAGGAACTGGTTT 1152
Query 1096 TCCGGTGACGTTCCTTCCGACATCGGAAGATG-TCCTTCCCTGAAATCGCTTGACTTGAG 1154
||||||||||||||||||||||||||| |||| || |||||| |||||||||||||||||
Sbjct 1153 TCCGGTGACGTTCCTTCCGACATCGGACGATGCTC-TTCCCTTAAATCGCTTGACTTGAG 1211
Query 1155 TGAGAACTACTTCTCCGGGAATCTTCCGGCTTCCATGAAAAGCCTGGGCTCTTGCCGCTC 1214
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||
Sbjct 1212 TGAGAACTACTTCTCCGGGAATCTTCCGGATTCGATGAAAAGCCTGGGCTCTTGCAGCTC 1271
Query 1215 CATCCGACTGCGAGCAAACTCTCTCATCGGAGAAATCCCTGATTGGATCGGTGACATTGC 1274
|||||| ||||||| ||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1272 CATCCGTCTGCGAGGAAACTCTCTGATCGGAGAAATCCCTGATTGGATCGGCGACATTGC 1331
Query 1275 CACTCTCGAGACTCTTGATCTCTCCGCCAACAACTTCTCCGGCACTGTCCCATCCTCCCT 1334
||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1332 CACTCTCGAGATTCTTGATCTCTCCGCCAACAACTTCACCGGCACTGTCCCATTCTCCCT 1391
Query 1335 CGGAAATCTCGAGTTTTTGAAGGAACTCAATCTATCCGCAAACATGCTCGCTGGGGAGCT 1394
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1392 CGGAAATCTCGAGTTTTTGAAGGATCTCAATCTATCCGCAAACATGCTCGCTGGAGAGCT 1451
Query 1395 CCCGCAGAC-CATCTCCAACTGCTCCAACCTAATCTCCATTGATGTCAGTAAGAATTCAT 1453
||| ||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1452 CCCACAGACTC-TCTCCAACTGCTCCAACCTAATCTCCATTGATGTCAGCAAGAATTCAT 1510
Query 1454 TCACAGGAGATGTGCTTCAGTGGATGTTCACCGGAAACTCTGAAAGTCCCTCGCTTTCCA 1513
|||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1511 TCACCGGAGATGTGCTTAAGTGGATGTTCACCGGAAACTCTGAAAGTTCCTCGCTTTCCA 1570
Query 1514 GATTTAGCCTCCACAAAAGATCAGGGAACGACACCATTCTGCCCATCGTCGGATTCCTTC 1573
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
Sbjct 1571 GATTTAGCCTCCACAAAAGATCAGGGAACGACACCATTATGCCCATCGTTGGATTCCTCC 1630
Query 1574 AAAGTCTCCGGGTCCTCGATCTGTCTTCGAACGGGTTTACCGGTGAGTTACCGTCTAACA 1633
|| ||||||||||||||||||||||||| ||||| || |||||||| |||||||||||||
Sbjct 1631 AAGGTCTCCGGGTCCTCGATCTGTCTTCAAACGGCTTCACCGGTGAATTACCGTCTAACA 1690
Query 1634 TTTGGATCCTCACAAGTTTGTTGCAGCTGAATATGTCCACCAACTCTCTGATCGGTTCCA 1693
||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1691 TTTGGATTCTCACAAGTTTGTTGCAGCTCAATATGTCCACCAACTCTCTCTTCGGTTCCA 1750
Query 1694 TACCCACCGGCATTGGAGGATTGAAAGTCGCTGAGATTCTTGATCTGAGTTGTAATCTTC 1753
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 1751 TACCCACCGGCATTGGAGGATTGAAAGTCGCTGAGATTCTTGATCTTAGTAGTAATCTTC 1810
Query 1754 TCAACGGAACCGTTCCTTCTGAGATCGGAGGAGCCGTCTCCCTAAAACAACTTCATCTCC 1813
||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1811 TCAACGGAACCCTTCCTTCTGAGATCGGAGGAGCCGTCTCCCTGAAACAACTTCATCTCC 1870
Query 1814 AGAGAAACCGCCTCTCCGGCCAGATTCCGGCACAA-ATCTCTAACTGTTCGGCTTTAAAC 1872
| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1871 ACAGAAACCGCCTCTCCGGCCAGATTCCGGCA-AAGATCTCTAACTGTTCGGCTTTAAAC 1929
Query 1873 GCAATAAATCTGTCGGAGAATGAACTATCCGGTGCGATTCCGGGGAGCATTGGCAGTTTG 1932
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1930 ACAATAAATCTATCGGAGAATGAACTATCCGGTGCGATTCCGGGGAGCATTGGCAGTCTG 1989
Query 1933 AGCAACCTTGAGTACATTGACCTGTCGAGAAACAATCTCTCGGGAAGCCTACCAAAAGAA 1992
|||||||||||||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct 1990 AGCAACCTTGAGTACATTGATCTGTCGAGAAACAATCTCTCGGGAAGTCTTCCCAAAGAA 2049
Query 1993 ATAGAGAAACTTTCGCATCTCTTGACCTTCAACATCTCCCACAACAGCATCACAGGGGAG 2052
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 2050 ATAGAGAAACTTTCGCATCTCTTGACCTTTAACATCTCCCACAACAACATCACAGGGGAG 2109
Query 2053 CTGCCAGCTGGAGGTTTTTTCAACACCATCCCTCTCTCTGCCGTCGCCGGAAACCCATCC 2112
||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 2110 CTGCCAGCTGGAGGTTTCTTCAACACCATCCCTCTCTCTGCTGTCACCGGAAACCCATCC 2169
Query 2113 CTCTGTGGCTCCGTTGTGAACCGCTCATGTCTCTCTGTCCACCCCAAACCAATCGTCCTC 2172
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2170 CTTTGTGGCTCCGTCGTTAACCGCTCATGTCTCTCTGTCCACCCCAAACCAATCGTCCTC 2229
Query 2173 AACCCCAACTCCTCCAATCCAACCAATGGTCCTGCTCTCACCGGGCAGATCAGGAAGAGC 2232
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 2230 AACCCCAACTCCTCCAATCCAACAAATGGTCCTGCTCTCACAGGGCAGATCAGGAAGAGC 2289
Query 2233 GTTCTGAGCATATCTGCGCTCATTGCGATTGGCGCAGCCGCCTTCATTGCCATCGGGGTG 2292
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 2290 GTTCTGAGCATATCTGCGCTCATTGCCATTGGCGCAGCTGCCGTCATTGCCATCGGGGTG 2349
Query 2293 GTGGCCGTAACTCTTCTCAACCTGCACGCCCGATCTAGTCTTTCCCGTCACAATGCAGCT 2352
||||| |||||||| |||||| ||||||||||||||||| |||| |||||| ||||||||
Sbjct 2350 GTGGCTGTAACTCTGCTCAACGTGCACGCCCGATCTAGTGTTTCACGTCACGATGCAGCT 2409
Query 2353 GCTGCTCTAGCTCTGTCGGTTGGAGAAACGTTCAGCTGTTCCCCAAGTAAAGATCAAGAA 2412
|||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2410 GCTGCTCTCGCTCTGTCGGTTGGAGAGACGTTCAGCTGTTCGCCAAGTAAAGATCAAGAG 2469
Query 2413 TTCGGAAAGCTGGTGATGTTCTCTGGCGAAGCGGACGTGTTTGACACCACAGGCGCTGAT 2472
|| ||||||||||| |||||||| || |||| |||||||||||||||||| |||||||||
Sbjct 2470 TTTGGAAAGCTGGTCATGTTCTCAGGGGAAGTGGACGTGTTTGACACCACTGGCGCTGAT 2529
Query 2473 GCGTTGCTCAACAAGGACTGCGAGCTGGGACGAGGCGGGTTCGGAGTGGTGTACAAAACG 2532
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct 2530 GCGTTGCTCAACAAGGACAGCGAGCTGGGACGAGGCGGGTTCGGTGTGGTGTACAAAACG 2589
Query 2533 AACCTCCAGGATGGGCGTCCTGTTGCTGTCAAGAAACTGACTGTGTCGGGTCTAATAAAG 2592
| || ||||||||||||||||| || || ||||||||||| ||||||||||||||||||
Sbjct 2590 AGTCTTCAGGATGGGCGTCCTGTGGCAGTTAAGAAACTGACAGTGTCGGGTCTAATAAAG 2649
Query 2593 TCGCAGGAGGAGTTCGAGAGAGAGATGAGAAAACTCGGGAAGCTGAGGCACAAGAATGTG 2652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2650 TCGCAGGAGGAGTTCGAGAGAGAGATGAGAAAACTCGGGAAGCTGAGGCACAAGAATGTG 2709
Query 2653 GTGGAGATTAAAGGGTACTATTGGACGCAATCGCTGCAGCTCCTGATCCACGAGTTTGTT 2712
|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 2710 GTGGAGATAAAAGGGTACTACTGGACGCAATCGCTGCAGCTCTTGATCCACGAGTTTGTT 2769
Query 2713 TCAGGCGGAAGCTTGTACAGACATCTCCACGGAGATGAGAGCCTTTGCCTAACGTGGCGT 2772
|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 2770 TCAGGCGGAAGCTTGTACAGACATCTCCACGGAGATGAGAGCGTTTGCCTAACTTGGCGT 2829
Query 2773 CAACGTTTCAGCATCATTCTAGGGATAGCAAGAGGTCTTGCTTATCTGCATAGCAGTAAC 2832
||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 2830 CAACGTTTCAGTATCATTCTAGGGATAGCAAGAGGTCTGGCTTTTCTGCATAGCAGTAAC 2889
Query 2833 ATCACTCACTACAATC-TGAAAGCAACGAATGTGCTCATAGACGCCACAGGGGAGGCTAA 2891
|||||||||||||| | |||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2890 ATCACTCACTACAA-CATGAAAGCAACGAATGTGCTCATTGACGCCGCAGGGGAGGCTAA 2948
Query 2892 AGTCTCTGACTTTGGGCTGGCCAGATTGTTGGCTTCGGCGCTGGACAGGTGTGTCTTGAG 2951
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 2949 AGTCTCTGACTTTGGGCTGGCCAGACTGTTGGCTTCGGCGCTGGACAGGTGCGTCTTGAG 3008
Query 2952 TGGAAAGGTACAGAGCGCGTTGGGGTACACAGCCCCGGAATTTGCATGCCGGACAGTCAA 3011
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 3009 TGGCAAGGTACAGAGCGCGTTGGGGTACACAGCCCCGGAGTTTGCATGCCGGACAGTCAA 3068
Query 3012 GATAACCGACAAGTGCGATGTTTACGGGTTTGGGATCCTGGTGCTTGAGATGGTGACAGG 3071
||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 3069 GATAACCGACAGGTGCGATGTTTACGGGTTTGGGATCCTGGTGCTGGAGGTGGTGACAGG 3128
Query 3072 GAAGAGGCCTGTGGAGTACGCTGAGGACGACGTGGTGGTGCT-GTGTGAGACGGTGAGAG 3130
|||||| || ||||||||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 3129 GAAGAGACCCGTGGAGTACGCTGAGGACGACGTCGTGGT-CTTGTGTGAGACGGTGAGAG 3187
Query 3131 AAGGGTTAGAAGAAGGGAGGGTGGAGGAGTGCGTCGACCCTCGGTTGAGAGGGAATTTTC 3190
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 3188 AAGGGTTAGAAGAAGGGAGGGTGGAGGAGTGCGTTGACCCTCGGTTGAGAGGGAATTTTC 3247
Query 3191 CGGCGGAGGAGGCAATACCGGTGATTAAACTAGGGCTGGTATGTGGGTCCCAAGTGCCGT 3250
| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 3248 CAGCGGAGGAGGCAATACCGGTGATTAAACTAGGGTTGGTGTGTGGGTCCCAAGTGCCGT 3307
Query 3251 CAAATAGGCCGGAGATGGAGGAAGTAGTGAAGATATTAGAGCTCATACAGTGTCCCTCTC 3310
| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 3308 CGAATAGGCCGGAGATGGAGGAAGTGGTGAAGATATTAGAGCTCATACAATGTCCCTCTC 3367
Query 3311 ATGACTTAGAGTGATTCA-TCCACTACGGATGAATCAATCCTCCTTGCTTGTATTTCTTC 3369
|||||||||||||||| | || ||||| ||||||||||||||||||| ||||||||||||
Sbjct 3368 ATGACTTAGAGTGATT-AGTCAACTACAGATGAATCAATCCTCCTTGTTTGTATTTCTTC 3426
Query 3370 ATTCCTT-T-CAATTTTCATATATTATCATAATATAGTGTTCGTCTTTTCTAAAAA 3423
||||||| | |||||||||||| | ||||||||||||||||||||||||||| |||
Sbjct 3427 ATTCCTTGTTCAATTTTCATAT-T-ATCATAATATAGTGTTCGTCTTTTCTATAAA 3480
Score = 285 bits (154), Expect = 2e-75
Identities = 288/346 (83%), Gaps = 36/346 (10%)
Strand=Plus/Plus
Query 1 TAGTAATAAAAAGCGGGGAGAAGAGAAGATTGTCTCCT--A--GACTTGAATCCTTGAGc 56
||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 16 TAGTAATAAAAAGCGGGGAGAGGAGAAGATTGTCTCCTAGAGCGACTTGAATCCTTGAGC 75
Query 57 -ctc---ctcctct-ccggaacctcccttttctctttactctctctatctctctct-t-t 109
|| ||| ||| ||||| | ||||||||||||||||||||||| ||||||||| | |
Sbjct 76 TTTCAAACTCATCTCCCGGAGCTTCCCTTTTCTCTTTACTCTCTCTCTCTCTCTCTCTCT 135
Query 110 -t-tc-ctttGGCCTAGTAAGTTTATCTTT-TGGGGGTCTGTCTTAATTCCACCATTAAT 165
| || |||| || | |||| | ||| | || ||||||||||||||||||||||||
Sbjct 136 CTCTCACTTT--TCT-CT--GTTT-TTTTTCTTGGTGTCTGTCTTAATTCCACCATTAAT 189
Query 166 GCTCTCTACCTTCCTCCCGTTTACTCT-CC--TGcttttgtattttctctttctcttttc 222
|||||||||||||| | |||||||| || ||||||||| ||||||||||||||||||
Sbjct 190 GCTCTCTACCTTCC-CT--TTTACTCTTCCCCTGCTTTTGTGTTTTCTCTTTCTCTTTTC 246
Query 223 ctaaaccctttcaaactctgcctcttcttctttctttttctcAAATAACAACAACAGTTT 282
|||||||||||||||||| | || ||||||||||||||||| ||||||| ||||
Sbjct 247 -TAAACCCTTTCAAACTCTTCTTCCTCTTCTTTCTTTTTCTCCAATAACA------GTTT 299
Query 283 CTTATGCTCATGTTAATTCTGCAGCAGTTTTTTCCGGTACAAAGAA 328
||| |||||||||||| ||||||| | |||||||||| ||||||
Sbjct 300 CTTGTGCTCATGTTAAAACTGCAGC--TCTTTTCCGGTAAAAAGAA 343
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 170366938428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5