BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486883
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01860.1 | Symbols: | C2H2 and C2HC zinc fingers superfamil... 671 0.0
> AT5G01860.1 | Symbols: | C2H2 and C2HC zinc fingers superfamily
protein | chr5:335630-336277 FORWARD LENGTH=648
Length=648
Score = 671 bits (363), Expect = 0.0
Identities = 441/477 (92%), Gaps = 12/477 (3%)
Strand=Plus/Plus
Query 208 AGAAATGAGGCTAAAGCGAGGGTGTTTGCTTGCACCTTCTGCAAAAAAGAGTTCTCTACG 267
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 AGAAACGAGGCTAAAGCGAGGGTGTTTGCTTGCACCTTCTGCAAAAAAGAGTTCTCTACG 234
Query 268 TCTCAAGCCTTAGGAGGACATCAGAACGCTCACAAGCAAGAGCGATCACTGGCTAAAAGG 327
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 235 TCTCAAGCCTTAGGAGGACATCAGAACGCTCACAAGCAAGAGCGATCATTGGCTAAAAGG 294
Query 328 CGTAAAGAGATCGAACTCAACTATCCTGGACTCTCCTTCTACAGCCAGTATCCGCCAAGT 387
||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||
Sbjct 295 CGTAAAGAGATCGAAATCAACTATCCTGAACTCTCCATCTACAGCCAGTACCCGCCAAGT 354
Query 388 GGAGTTTCCTACAGCAGCAGTTCCTCCCAGTATGATCTCGGGGTTCGTTACAATCCTAAC 447
||| |||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 355 GGACTTTCCTTCAGCAGCAGCTCCTCGCAGTATGATCTCGGGGTTCGTTACAATCCTAAC 414
Query 448 ATTGCTAAAACTA--A-GCCCTATCCGTTCAACATCTTCACATGTCGACTCGGATACAGA 504
||||||||||||| | |||||||||||||||||||||| |||||||| | |||||||||
Sbjct 415 ATTGCTAAAACTACTAAGCCCTATCCGTTCAACATCTTCGCATGTCGATTTGGATACAGA 474
Query 505 GGC---CTTAATATCCCTCTGC-TGTCTCACCTCTCGGTTCCAAAGACGGACGATTTGTC 560
|| || ||| |||||| | ||||||||||||||||||||||||| |||||||||||
Sbjct 475 GGGGGACTAAATTTCCCTCC-CATGTCTCACCTCTCGGTTCCAAAGACAGACGATTTGTC 533
Query 561 CAAAAACTTGATTTCAAATCTAGAGGGCAGCATTCAGGACCAAGCCG-AGAAAAAAGATC 619
|| ||||||||||||||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct 534 CATAAACTTGATTTCAAATCTAGAGGGCAGCATTCACGACCAAGCCGTA-AAAAAAGATC 592
Query 620 AACCCGACA-CTGATCCTTCCAAGGATTCTGACATAGACTTGTCCCTGAAGCTATAG 675
|||| || | ||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 593 AACCTGA-AGCTGATCCTTGCAAGGATTCTGATATAGACTTGTCCCTTAAGCTATAG 648
Score = 231 bits (125), Expect = 5e-60
Identities = 155/169 (92%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 1 ATGGAACTCAACCTCTCTACACCCACATCATGTTCCTCCAGCAGCATCTCATCATCCTCG 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGGAACTAAACCTCTCTACACCCACATCATGTTCCTCCAGCAGCATCTCATCATCTTCG 60
Query 61 CATGAGGTCATCCCCAGGACCAAGGGTAAATTGAAAGAGAAGGTTACGGCTGAGCCATCG 120
||||||| |||||| ||||||||||||||| ||||||| |||| ||||||||||| |||
Sbjct 61 CATGAGGCCATCCCTAGGACCAAGGGTAAAACGAAAGAGGAGGTCACGGCTGAGCCGTCG 120
Query 121 AAGGAGACTC--C-GCGGCTAGAGTTCCGTTTCCTGTTCAACGAGAGTA 166
||||||| || | ||||||||||||||| |||||||||||||||||||
Sbjct 121 AAGGAGAATCAGCAGCGGCTAGAGTTCCGCTTCCTGTTCAACGAGAGTA 169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32652195550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5