BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486884
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01840.1 | Symbols: ATOFP1, OFP1 | ovate family protein 1 | ... 1166 0.0
> AT5G01840.1 | Symbols: ATOFP1, OFP1 | ovate family protein 1
| chr5:324552-325516 FORWARD LENGTH=965
Length=965
Score = 1166 bits (631), Expect = 0.0
Identities = 740/793 (93%), Gaps = 5/793 (1%)
Strand=Plus/Plus
Query 1 GGTAATAGTTATCGGTTTAAGCTATCGGAGTTAGTCCCTAACGCATGGTTTTACAAACTT 60
||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 4 GGTAATAACTATCGGTTTAAGCTATCGGAGTTAATCCCTAACGCTTGGTTTTACAAACTT 63
Query 61 AAAAACATGGCCAAATCTAAGAAGAAGAAACTTCAGAGCCAACCAAACAGCACCTCCTCC 120
| | ||||| ||||||| ||||||||||| ||||||||||||||||| |||| || ||
Sbjct 64 AGAGACATGTCCAAATCCAAGAAGAAGAATCTTCAGAGCCAACCAAATAGCA---CCACC 120
Query 121 TCCAAGAAGAAACACCACGCAGTCCCTACTCCTACGTCCACGACGGCACGCAGTCCTAGG 180
||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||
Sbjct 121 TCCAAGAAGAAACACCACGCAGTCCCTACTCCTACGTCCACAACGCCACTCAGTCCTAGG 180
Query 181 CCTCCTAGGCGCTCTTCTCACTCTTCCAAACCGCTACCCTCCCATACGCCCAGAAAGTCC 240
|||||||||||| ||||||||||||||||| ||| |||||||||| | ||||| ||||||
Sbjct 181 CCTCCTAGGCGCCCTTCTCACTCTTCCAAAGCGCCACCCTCCCATCCTCCCAGGAAGTCC 240
Query 241 TCCGAGAACCGTCTTCGTCACCGAGCCACCGTCGACTCTAAGTCATCCACGACTTCCGGC 300
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TCCGGGAACCGTCTTCGTCACCGAGCCACCGTCGACTCTAAGTCTTCCACGACTTCCGGC 300
Query 301 GACACCACTGCCACAGAAACTGGTTCTTTCTCACCGGAGTTTCGCTCGGATCAAGTTCTC 360
|||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GACAGCACTACCACAGAAACAGGTTCTTTCTCACCGGACTTTCGCTCGGATCAAGTTCTC 360
Query 361 CTCCCCGACGAGTCATTAACGGGCTCCTGGCGTAGCCCTTCCAGCTCCAAGCTATCC-AA 419
||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||
Sbjct 361 CTCCCCGACGAGTCATTAACGGGCTCCTGGCACAGCCCTTGCAGCTCCAAGTTATCCAAA 420
Query 420 ACCTGCATCCTTTACGCCGCCGCCGGAACTCGATCTCCGGCCCATCATTACCAAACCGGC 479
||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 421 ACC-GCAACCTTTACGCCGCCGCCGGAACTCGAACTCCGGCCCATCATTACCAAAACGGC 479
Query 480 CGCCACCGGACGGAAAACGGCGGTTAGTTCTCCGGCAGGGGTGAGACTTAAAATGCGCTC 539
|||||||| ||||||||||||||| | ||||||||| ||||||||||||| |||||| ||
Sbjct 480 CGCCACCGCACGGAAAACGGCGGTGAATTCTCCGGCGGGGGTGAGACTTAGAATGCGGTC 539
Query 540 GCCGCGAATCTCGGTGAGCAGCAGCGCAAGGAGAAGCGGGTCGTCGGCGAGGAGGAGCAG 599
|||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 540 GCCGCGGATCTCGGTGAGCAGCAGCGCAAGAAGAAGCGGGTCGTCGGCTCGGCGGAGCAG 599
Query 600 GGCTGTGGTGAAGGCGTCGGTGGATCCGAAGAGAGACTTTAAGGAATCGATGGAGGAGAT 659
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 600 GGCGGTGGTGAAGGCGTCGGTGGATCCGAAGAGAGACTTTAAGGAGTCGATGGAGGAGAT 659
Query 660 GATCGCTGAGAACAAGATAAGAGCGACAAAGGATCTAGAGGAGCTTTTGGCTTGCTACCT 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 660 GATCGCTGAGAACAAGATAAGAGCGACAAAGGATCTAGAGGAGCTTTTGGCTTGCTATCT 719
Query 720 CTGTCTCAATTCAGACGAGTATCACGCTATTATCATCAATGTCTTCAAGCAAATCTGGCT 779
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 720 CTGTCTCAATTCAGACGAATATCACGCTATTATCATCAATGTCTTCAAGCAAATCTGGCT 779
Query 780 TGATCTTAATCTT 792
|||||||||||||
Sbjct 780 TGATCTTAATCTT 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38529590749
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5