BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486885
Length=2227
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01830.1 | Symbols: | ARM repeat superfamily protein | chr5... 3046 0.0
> AT5G01830.1 | Symbols: | ARM repeat superfamily protein | chr5:320695-323169
FORWARD LENGTH=2475
Length=2475
Score = 3046 bits (1649), Expect = 0.0
Identities = 1922/2051 (94%), Gaps = 30/2051 (1%)
Strand=Plus/Plus
Query 152 ATGGCTGTTACTCTTGATTCTGCTTTTCCGGCGAGAAAACGTCGCCCTTTGGTCGTC--G 209
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
Sbjct 289 ATGGCTGTTACTCTTGATTCTCCTTCTCCGGCGAGAAAACGTCGCCCTTTGGTCGTCGGG 348
Query 210 --ATTC---TC-CC-AAGCTTTC-T--GATGCCAAACTTACTCGGTCTCTGTTCCTGGCC 259
|||| || || |||||||| | ||| ||||||| |||||||||||||| |||||
Sbjct 349 TCATTCGAATCTCCGAAGCTTTCTTCAGATACCAAACTGACTCGGTCTCTGTTTCTGGCG 408
Query 260 TCTCATGAGATTTCTTCTATGCAGCCTCTCCGC-TTCATCCTCCGACGCAATTCTCTCTC 318
||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 409 TCTCATGAGATTTCTTCTATGCAGCCTCTCC-CATTCATTCTCCGACGCAATTCTCTCTC 467
Query 319 CCTCATTCGCAAAGTCAAGATCCTAGCTTCCGTCTTCGATGAGCTTCTTCT--C-CGCTC 375
||||||||||||||| ||||| |||||||||||||||||||||||||||| | || ||
Sbjct 468 CCTCATTCGCAAAGTGAAGATATTAGCTTCCGTCTTCGATGAGCTTCTTCTCCCTCGTTC 527
Query 376 CCAGC-TGCTCGTCTACTCTCAATCCGCTCAGCTCTGCTTCGAGGAAATGCAAATCGTTA 434
||| | || |||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 528 CCAACTTG-TCGTCTACTCTCAATCCGCTCATCTCTGCTTCGAAGAAATGCAAATCGTTA 586
Query 435 TGCAACGTATCAAGTCTTTGATCGATGACTGCTCTCGTGTTAGCAAACTCTGGTTACTCC 494
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 587 TGCAACGTATCAAGTCTTTGATCGATGACTGTTCTCGTGTTAGCAAACTCTGGCTACTCT 646
Query 495 TGCAGATCGATATCGTTGCCTTCAACTTTCACGAGCTTCTCACCGATTTGTCCACCGTTC 554
|||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 647 TGCAGATCGACATCGTTGCCTTCAACTTTCACGAGCTTGTCACCGATTTATCCACCGTTC 706
Query 555 TTGATATTTTACCGGTCCATGAATTTGACTTAAGCGACGACGCCCAAGATCTCATCTCTC 614
|||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||
Sbjct 707 TTGATATTTTACCGCTCCATGACTTTGACCTCAGCGACGACGCCCAAGATCTCATCTCTC 766
Query 615 TCCTTGGAAAACAATGCTCCGACTCTGTTCAGTTCGTCGATGCCCGCGACGATGCTCTCC 674
||||| ||||||||||||||| ||||||||||||||||| |||||||||| ||||||||
Sbjct 767 TCCTTACAAAACAATGCTCCGATTCTGTTCAGTTCGTCGACGCCCGCGACGTTGCTCTCC 826
Query 675 GTCGTAAAGTCACCGATACCATCGCCGGCATCAAGCACCAGATCTCACCGGATCACTCTA 734
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 827 GTCGTAAAGTCACCGATACAATCGCCGGGATCAAGCACCAGATCTCACCGGATCACTCTA 886
Query 735 GC-CTGATCGAGATTTTCAACGACCTTGGTTTCA-CCGATTCTGCTACTTTGACCGACGA 792
| || ||| |||||||||||||||||||||| | |||||||||||| ||||||||||||
Sbjct 887 -CTCTCATCAAGATTTTCAACGACCTTGGTTT-ATCCGATTCTGCTAGTTTGACCGACGA 944
Query 793 AATCCAGAGATTAGAGGACGAAATTCAGGATCAGATCGACGACAGATCCAAATCCGCAGC 852
||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 945 AATTCAGAGATTGGAAGACGAGATTCAGGATCAGATCGACGACAGATCCAAATCCGCAGC 1004
Query 853 CGCTTCTCTCATCGGACTCGTGCGTTACTCTAAGTGCGTCTTATACGGTCCCTCTACGCC 912
||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 1005 CGCCTCTCTTATCGGACTCGTCCGTTACTCTAAGTGCGTCTTATACGGTCCCTCCACGCC 1064
Query 913 GGCTCCCGATTTCCGCCGCCACCAATCCTTATCCGACGCAAACATCCCCGCGGATTTCCG 972
|||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1065 GGCTCCAGATTTCCGCCGCCACCAATCCTTATCTGACGCTAACATCCCCGCGGATTTCCG 1124
Query 973 GTGTCCGATCACCCTCGAGCTTATGCGGGATCCGGTGGTCGTCT-CCACCGGTCAAACAT 1031
||||||||||||||||||||| ||||||||||||||||| || | |||||||||||||||
Sbjct 1125 GTGTCCGATCACCCTCGAGCTGATGCGGGATCCGGTGGTGGT-TGCCACCGGTCAAACAT 1183
Query 1032 ACGATCGTGAGTCGATCGATCTATGGATCCAATCGGGGCACAACACGTGTCCGAAAACAG 1091
||||| | ||||| |||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1184 ACGATAGAGAGTCCATCGATCTTTGGATCCAATCGGGGCATAACACGTGTCCGAAAACAG 1243
Query 1092 GTCAAGTCCTCAAACACACCAGCCTCATACCAAACCGTGCCTTGAAGAACCTGATCGTTT 1151
|||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||
Sbjct 1244 GTCAAGTCCTCAAACACACCAGCCTCGTACCTAACCGTGCCTTGAAGAACCTCATCGTTT 1303
Query 1152 TGTGGTGCCGCGATCACAAGATACCCTTCGAGCTATACGGTGACGGCGGCGGAGAACCTG 1211
|||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1304 TGTGGTGCCGCGATCAGAAGATACCGTTCGAATTATACGGTGACGGCGGCGGAGAACCTG 1363
Query 1212 CGCCGTGCAAGGAGGCGGTCGAGTTTACGAAGATGATGGTTTCGTTTCTCATCGAGAAGC 1271
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1364 CGCCGTGCAAGGAGGCGGTGGAGTTTACGAAGATGATGGTTTCGTTTCTCATCGAGAAGC 1423
Query 1272 TCTCCTTGGCAGATTCTAACGGTGTCGTTTTTGAGCTCCGGGCGCTAGCCAAGTCAGATA 1331
||||| |||||||||||||||||||||| || |||||||||||||| || ||||||||||
Sbjct 1424 TCTCCGTGGCAGATTCTAACGGTGTCGTGTTCGAGCTCCGGGCGCTCGCAAAGTCAGATA 1483
Query 1332 CGGTGGCCCGAGCATGCATAGCCGAGGCTGGAGCCATACCGAAGCTGGTACGCTT-TCTA 1390
| ||||||||||| |||||||||||||||||||||||||| |||||||| || || ||||
Sbjct 1484 CTGTGGCCCGAGCCTGCATAGCCGAGGCTGGAGCCATACCCAAGCTGGTTCG-TTATCTA 1542
Query 1391 GCCACGGAGTGCCCGAGCCTTCAGATAAACGCCGTTACGACGATCCTAAACCTCTCCATC 1450
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1543 GCCACAGAGTGCCCGAGCCTTCAGATAAACGCCGTTACGACGATCCTAAACCTATCCATC 1602
Query 1451 CTGGAACAGAACAAAACGAGGATCATGGAAACTGACGGAGCTTTAAACGGCGTCATCGAG 1510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CTGGAACAGAACAAAACGAGGATCATGGAAACTGACGGAGCTTTAAACGGCGTCATCGAG 1662
Query 1511 GTTCTTCGTTCGGGCGCCACGTGGGAGGCTAAGGCTAACGCCGCTGCGAC-TCTGTTCAG 1569
|||||||||||||| |||||||||||||||||||||||||| || ||||| | |||||||
Sbjct 1663 GTTCTTCGTTCGGGTGCCACGTGGGAGGCTAAGGCTAACGCAGCCGCGACAT-TGTTCAG 1721
Query 1570 TTTGGCGGGCGTCTCGGCCTACCGAAGAAGACTCGGGAGAAAAGCACGTGTCGTAAGCGG 1629
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1722 TTTGGCGGGCGTCTCGGCATACAGAAGAAGACTCGGGAGAAAAGCACGTGTCGTAAGCGG 1781
Query 1630 GTTGGTTGACTTGGCTAAGCAGGGCCCCACCAGCTCTAAGAGAGACGCGCTCGTGGCGAT 1689
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 ATTGGTTGACTTGGCTAAGCAGGGCCCCACCAGCTCTAAGAGAGACGCGCTCGTGGCGAT 1841
Query 1690 CCTGAACCTGGTGGCTGAGAGAGAGAACGTGGGGAGGTTCGTTGAAGCTGGGGTAATGGA 1749
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1842 CCTAAACCTGGTGGCTGAGAGAGAGAACGTGGGGAGGTTCGTTGAGGCTGGGGTAATGGG 1901
Query 1750 AGCAGCCGGAGATGCATTCCAGGAGCTACCGGAGGAAGCGGTGGCTGTCGTGGAGGCGGT 1809
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1902 AGCCGCAGGAGATGCATTCCAGGAGCTACCGGAGGAAGCGGTGGCTGTCGTGGAGGCGGT 1961
Query 1810 GGTCAGGAGGGGTGGACTCATGGCGGTTTCAGCTGCTTTCAGTTTGATACGGCTTTTGGG 1869
|||||||||||| ||||||||||||||||| || |||||||||||||| || ||||||||
Sbjct 1962 GGTCAGGAGGGGAGGACTCATGGCGGTTTCTGCCGCTTTCAGTTTGATTCGACTTTTGGG 2021
Query 1870 GGAGGTGATGAGGGAAGGAGCGGACACCACAAGGGAGAGCGCGGCGGCGACGCTGGTCAC 1929
|||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 2022 GGAGGTGATGAGAGAAGGAGCGGATACCACAAGGGAGAGTGCGGCGGCAACGCTGGTCAC 2081
Query 1930 GATGTGTCGGAAAGGGGGGTCGGAGCTAGTGGCGGAGATGGCGGCGATTCCAGGGATAGA 1989
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2082 GATGTGTCGGAAAGGAGGGTCGGAGCTAGTGGCGGAGATGGCGGCTATTCCAGGGATAGA 2141
Query 1990 GAGGGTTATATGGGAGATGATAGGAGCTGGAACGGCCAGGGGAGGGAGGAAAGCGGCGTC 2049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2142 GAGGGTTATATGGGAGATGATAGGAGCTGGAACGGCCAGGGGAGGGAGGAAAGCGGCGTC 2201
Query 2050 GTTGATGAGATATCTAAGACGGTGGGCCGCCGGAGATACACATGACACGGCGGCGGAGAC 2109
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||
Sbjct 2202 ATTGATGAGATATCTAAGACGGTGGGCCGCCGGAGATACCCATAACACGGCGGCGGAAAC 2261
Query 2110 GCAGAGCATTGTAGTGCCAACGCCAAGTAGGATTTTTAGTCCAGTTTTATGAtttttttt 2169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2262 GCAGAGCATTGTAGTGCCAACGCCAAGTAGGATTTTTAGTCCAGTTTTATGATTTTTCAT 2321
Query 2170 tttttt-tttt 2179
|||||| ||||
Sbjct 2322 TTTTTTGTTTT 2332
Score = 174 bits (94), Expect = 3e-42
Identities = 122/134 (91%), Gaps = 8/134 (6%)
Strand=Plus/Plus
Query 1 GGAATGTTTGACCTCTTGCCTCTGGGGCTCCTCTGTAATCTATAAGGCGGCTTTGTCCTC 60
|||||||||||||||| |||||| | ||||||||| ||||||||||||||||||
Sbjct 5 GGAATGTTTGACCTCTCGCCTCTCGTGCTCCTCTG-------TAAGGCGGCTTTGTCCTC 57
Query 61 TGTGCGACTGACTGACTTCTTCTGACGGCTCCGTCCACCGTCGTCTCTTCTTCCGTTACG 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 58 TCTGCGACTGACTGACTTCTTCTGACGGCTCCGTCCACCGTCGTCTCTTCTTCCGTTACG 117
Query 121 ACTTTTTCTTGCCA 134
|||||||||| |||
Sbjct 118 ACTTTTTCTT-CCA 130
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110491399545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5