BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486888
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01800.1 | Symbols: | saposin B domain-containing protein |... 1243 0.0
> AT5G01800.1 | Symbols: | saposin B domain-containing protein
| chr5:306968-308908 FORWARD LENGTH=1078
Length=1078
Score = 1243 bits (673), Expect = 0.0
Identities = 898/1000 (90%), Gaps = 42/1000 (4%)
Strand=Plus/Plus
Query 1 GATCGGTTGCTCTCTTTCATTAATCAGATCTAATTG--ACCCAA--TT-TTCATCGGAGG 55
|||||||||||||||||||||||||||||||||||| |||||| || |||||||||||
Sbjct 84 GATCGGTTGCTCTCTTTCATTAATCAGATCTAATTGATACCCAAGCTTCTTCATCGGAGG 143
Query 56 CCGTAAATCAATC-A-TAATCATGGGCGGTAGATTTGGAGTCCTCTTCTTCCTCTTGGGG 113
||||| || | | | || ||||||||||||||||||||||||| | |||||||
Sbjct 144 CCGTATCTC-A-CGAGGAAACATGGGCGGTAGATTTGGAGTCCTCCTAGTCCTCTT---C 198
Query 114 TTATTAACCTGCTGGTGGTCTTGTGACGCTACAGACCCGATTCTTCTCCAACCATTCGAA 173
| || | || ||||||||| | |||||| |||||||||||||| |||||||||||
Sbjct 199 CTCTTGA---GC---TGGTCTTGTCATGCTACAAACCCGATTCTTCTCGAACCATTCGAA 252
Query 174 TCAGCTCATGATGACAACCAAGTCTGTGAACTGTGTGACAAGTATGTTACGCTTGCCATT 233
|||||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||
Sbjct 253 TCAGCTCATGATGACAACCAAGTCTGTGAACTATGTGACAAGTATGTCACGCTAGTCATT 312
Query 234 GATTACCTTCAAGACTACGACAACCAGAATGCACTCGTCCAGGCCCTTCATATCAGCTGC 293
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 313 GATTACCTTCAAGACTACGACAACCAGAATGAACTCGTTGAGGCCCTTCATATCAGCTGC 372
Query 294 TCTCAGATTCCTCCTCTCAAAAAACAGTGTCTTTCCATGGTAGATCATTACACCCAACTT 353
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 373 TCTCAGATTCCTCCTCTCAAAAAACAGTGTCTTTCAATGGTAGATCATTACACCCAACTT 432
Query 354 TTCTTCACACAAGTCTCTACTATCAAATCAGACCAAATCTGCAAAAGGCTTAACCTCTGT 413
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 433 TTCTTCACACAAGTCTCTACTATCAAATCAGACCAAATCTGCAAACGGCTTAACCTCTGT 492
Query 414 CAAGCTGTGACTCCGGCCTTTGCTTCTCAAGTCCATCAAGGAAACTGCGAGGCTTGCCGC 473
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 493 CAAGCTGTGACACCGGCCTTTGCCTCTCAAGTCCATCAAGGAAACTGCGAGGCTTGCCGC 552
Query 474 CAGACTGTCTCCGAGGTTGTCACCAAACTCAAGGATCCTGAGACTAAGCTGAAGATAATT 533
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 GAGACTGTCTCTGAGGTTGTCACCAAACTCAAGGATCCTGAGACTAAGCTGAAGATAATT 612
Query 534 CGGTTACTTCTCAAGGAATGCAAGTCGCTTAACAATTACCAGGACAAGTGCAAGAAGATG 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 CGGTTACTTCTCAAGGAATGCAAGTCGCTTAACAATTACCAGGACAAGTGCAAGAAGATG 672
Query 594 GTATTCGAGTACGGGCCTCTGATGCTTACGGATTTGGAGAAGTTTCTGGAAAAGAAAGAC 653
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 673 GTATTCGAGTACGGGCCTCTGATGCTTACGGATTTGCAGAAGTTTCTGGAGAAGAAAGAC 732
Query 654 GTGTGCTTTATCCTCCACGTCTGTCCAGGTCCAGCCACCCACCATGGCTACATTCCTGCG 713
|||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct 733 GTGTGCACTATCCTCCACGTCTGTCCAGGTCCAGCCACCCACCGTGACTACGTTCCTGCG 792
Query 714 GTGGAGGCATTGGCAGATTCGTAAATCCGACAACCTCACA-----CA-CAT--AC-C-A- 762
|||||| ||||||||||||||||||| || | |||| | ||| || | |
Sbjct 793 GTGGAGTCATTGGCAGATTCGTAAATTCGGCCACCTTGGTTTTGTCGTCATTCACACTAA 852
Query 763 TGCCATGGCATATCATCGTCATGCTAATTTAATTTGGTAACCAG-TGGTCATGTAAAAAT 821
| ||||| ||| ||||| |||||||||||||||||||||| | |||||||||||| |
Sbjct 853 TACCATGCCATG--ATCGTGATGCTAATTTAATTTGGTAACCCGGTGGTCATGTAAA--T 908
Query 822 ACTGATTGATATAT-AAAAACATGAA-TACGTGAT-GATTGATTCTCGTGTGATTTGAAA 878
|||||||||||||| |||||||| || ||| ||| ||| |||||| |||||||||||||
Sbjct 909 ACTGATTGATATATTAAAAACAT-AACTACACGATTGAT-GATTCTTGTGTGATTTGAAA 966
Query 879 AGAACGTTGTCTAAAGGCCCATTGTCCATTTATGGGCTTTTTTGGCTCATTTCTACATTG 938
|||||| |||||||||||||||||||||| |||||| |||||| || ||||||||||||
Sbjct 967 AGAACGCTGTCTAAAGGCCCATTGTCCATCGATGGGCCTTTTTG-CTAATTTCTACATTG 1025
Query 939 CCCTTGTTGAGTAGTCTCGGATTTTCTCTAAAACGTTACG 978
||| ||||| ||||||| | |||||| |||||||||||||
Sbjct 1026 CCCATGTTGTGTAGTCT-G-ATTTTCGCTAAAACGTTACG 1063
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5