BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486890
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01760.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:29... 2128 0.0
> AT5G01760.1 | Symbols: | ENTH/VHS/GAT family protein | chr5:291712-294304
FORWARD LENGTH=1847
Length=1847
Score = 2128 bits (1152), Expect = 0.0
Identities = 1499/1658 (90%), Gaps = 58/1658 (3%)
Strand=Plus/Plus
Query 1 TTGTGGAATAAAGGCATTTTTAGACGAGAA-TT-TGT-G-TATGAGGCCATC-T-T-CTT 53
|||||||||||||||| |||| |||||||| || ||| | |||||||| || | | |||
Sbjct 2 TTGTGGAATAAAGGCA-TTTTCGACGAGAATTTCTGTAGAGATGAGGCCTTCTTGTGCTT 60
Query 54 CTTCTTCCTCATCCTCTGCTTCTCCTTCGTTTACGCTGTCTTCAGTGACAGTGACGGTGG 113
|||| ||||| |||||||||||||||||||| | ||| || |||||||||||| ||||||
Sbjct 61 CTTCCTCCTCCTCCTCTGCTTCTCCTTCGTTGAGGCTATCGTCAGTGACAGTGGCGGTGG 120
Query 114 ACAAAGCCACAAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 173
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ACAAAGCCACGAGCGAGCTTCTCCGCACTCCTGATTGGACCATCATCATCGCCATCTGCG 180
Query 174 ATTCCCTCAATTCTAATTGCTGGCAATGCAAATATGCGATCAAAGCCGTGAAGAGAAGAT 233
|||| |||||||||||| |||||||||||||| |||| ||||||||||||||||||||||
Sbjct 181 ATTCTCTCAATTCTAATCGCTGGCAATGCAAAGATGCCATCAAAGCCGTGAAGAGAAGAT 240
Query 234 TGCAGCACAAGAGTTCTAAAGTGCAATTACTCACTTTAACGTTGTTGGAGGCAATGCACA 293
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |
Sbjct 241 TGCAGCACAAGAGTTCTAGAGTTCAATTACTCACTTTAACGTTGTTGGAGGCAATGCTGA 300
Query 294 AAAATTGTGGTGACTTTGTGCATTCTCATATCACTAAGAAACATCTTCTTGAAGATATGG 353
| || || |||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 301 AGAACTGCGGTGACTTTGTGCATTCTCATATCGCTGAGAAACATCTTCTTGAAGATATGG 360
Query 354 TTAAGATTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACAGAA-TCTTGCTATTGTTG 412
||||| |||||||||||||||||||||||||||||||||||| || ||||| | ||||||
Sbjct 361 TTAAGCTTGTCAGGAAAAAGGGTGATTTTGAAGTAAGGAACA-AACTCTTGATTTTGTTG 419
Query 413 GATACTTGGAATGAAGCATTCAGTGGAGTTCCTTGTAAATACCCTCACTACAATTGGGCG 472
||||| |||||||||||||||||||||||| |||| ||| ||||||||||||| |||||
Sbjct 420 GATACATGGAATGAAGCATTCAGTGGAGTTGCTTGCAAACACCCTCACTACAACTGGGCA 479
Query 473 TACCAAGAGCTTAAAGGGTGTGGGGTGACATTCCCACAGCGTTCCAAAGAAGCACCCCTG 532
||||||||||||||| ||||||| |||| ||| ||||| ||||| |||||||||||||||
Sbjct 480 TACCAAGAGCTTAAACGGTGTGGTGTGAAATTTCCACAACGTTCGAAAGAAGCACCCCTG 539
Query 533 ATGCTTGCACCACCACCTCCAGTGACACA---TTCTTCTTCATCTTCTATGAATTTAATG 589
||||||| ||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct 540 ATGCTTGAACCACCACCTCCAGTGACACAGTCTTCTTCCTCTTCTTCTATGAATTTAATG 599
Query 590 TCCATCGGTTCATTTAGAAGGCTCGACGAAACTATGGCTACAGAAATTGAGGGCCTAAGC 649
||||| || |||||||||||||| ||||||||||||||||||||||||||| || |||||
Sbjct 600 TCCATTGGCTCATTTAGAAGGCTTGACGAAACTATGGCTACAGAAATTGAGAGCTTAAGC 659
Query 650 TTATCAAGCCTTGAATCCATGAGAAATGTGATTGATCTTGTGAACGACATGGTTCAAGCA 709
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 660 TTATCAAGCCTTGAATCCATGAGAAATGTGATGGATCTTGTGAATGACATGGTTCAAGCC 719
Query 710 GTGAATCCATCTGATAAATCAG-CTGTAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 768
|| ||||| ||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 720 GTTAATCCTTCTGATAAATCAGCCT-TAAAAGATGAGCTAATAGTTGATCTAGTAGAGCA 778
Query 769 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCTCATGAGGATGT 828
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 779 GTGCAGATCTAATCAGAAGAAACTAATCCAGATGCTCACTACAACTGCGGACGAGGATGT 838
Query 829 TATGACACGTGGGCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCGAGACATGACGC 888
| || ||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 839 TCTGGCACGTGGTCTCGAGCTGAATGACTCTTTGCAGGTAGTGCTCGCTAGACACGACGC 898
Query 889 TATTGCATCTGGTGTCTCTCTTCCTATGTTG--G-AGGCCCCAGAG--A-------CAAG 936
|||||| ||||| |||||||||||| ||||| | ||||||||||| | ||||
Sbjct 899 TATTGCCTCTGGCGTCTCTCTTCCTTTGTTGTTGCAGGCCCCAGAGCCAAGAGAGACAAG 958
Query 937 CTCTGCCCTCAAGACTTATGATGTTGTTGCTCTTGAGTCTG---ACTCTGAGTCTTCTTC 993
|||| |||||||||||| || || || |||||||||||||| ||||||||||||||||
Sbjct 959 CTCTTCCCTCAAGACTTGTGGTGCTGCTGCTCTTGAGTCTGCTGACTCTGAGTCTTCTTC 1018
Query 994 GTCGTC---GAGCAGTGAAAGTGAAACAGATGAAGGGGAGGATATTAAAGATGACTTTAT 1050
|| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1019 ATCATCATCGAGCAGTGAAAGTGAAACAGATGAAGTGGAGGATGTTAAAGATGACTTTAT 1078
Query 1051 GCAGCTAGCCAAAAGGCACACTCTATTAAGTGCCGAACACAGCGATGAAGAAGAAGAAAC 1110
||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||
Sbjct 1079 ACAGCTAGCCAAAAGGCATGCTCTATTAAATGCCCTACACAGCGATGAAGAAGAAGAAAC 1138
Query 1111 ATTGCTTCTAGGCA-CTGACAATGAAAAAATAGC-GAAAACAGAAGCCAAGACAAAGTGC 1168
|||||||||||||| | ||||||||||||| ||| ||| |||||||||||||| |||||
Sbjct 1139 ATTGCTTCTAGGCAAC-GACAATGAAAAAACAGCAGAAG-CAGAAGCCAAGACACAGTGC 1196
Query 1169 AAAAATCTAGCTTTGTTCGACACAACAACAACAAC--C-ACCAAGTCAGAGCAGGACATT 1225
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct 1197 AAAGATCTAGCTTTGTTCGACACAACAACAACAACAACCACCAAGTCAGAGCAGGATATT 1256
Query 1226 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTACCCTCCCCACAAACGCAACCT 1285
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1257 ATTGAACTTCTCAGCCTAACTCTGTCAACAACTGCTCTGCCCTCCCCACAAACGCAACCG 1316
Query 1286 CAAATGCAACCACAAACGCAACCTCCATCtttttttGTTGATGATAATATTCTTATGAAC 1345
|| | | | || ||| || | ||| ||||||| ||||||||||||||||||||||
Sbjct 1317 CA---G-A-CG-CA---GCA-CC-C-ATCGTTTTTTGCTGATGATAATATTCTTATGAAC 1364
Query 1346 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCGCAAGTCCCAAAAATGACTCAG 1405
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1365 AGCTACGTTGTCCCCTGGGCACAGTCCCAAGAAGAACCACAAGTCCCAAAAATGACTCAG 1424
Query 1406 TTTGCTCCATCGGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGT-TTAC 1464
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1425 TTTGCTCCATCAGGACCTCAGTTTCAGCCATGGCCTCTGCAGCAGCAACAACCGTATT-C 1483
Query 1465 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGTCAAGTAAATAGTAATGAAACAACATT 1524
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 1484 ATACGGTTATCCTCAGCCACAATGGAGCGGTGGCCAAGTAAACAGTAATGACACAACATT 1543
Query 1525 GTGGAGCCAAGGATGCAATGAGAATAAGGTTTTTGAGAGAAACTTGCAA-TACTCAAACT 1583
|||||||||||| |||||||||||| ||| |||||||||||||||||| | ||||||||
Sbjct 1544 CTGGAGCCAAGGAGGCAATGAGAATATGGTCTTTGAGAGAAACTTGCAAGT-CTCAAACT 1602
Query 1584 CCTTCCCCGCTAGAGCCACAAGG-ACATCCGGTGCTGC 1620
| || || ||||||||||| || ||||||||||||||
Sbjct 1603 CATTTCCTGCTAGAGCCACG-GGCACATCCGGTGCTGC 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5