BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486891
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01750.2 | Symbols: | Protein of unknown function (DUF567) ... 1099 0.0
> AT5G01750.2 | Symbols: | Protein of unknown function (DUF567)
| chr5:289765-291326 FORWARD LENGTH=1140
Length=1140
Score = 1099 bits (595), Expect = 0.0
Identities = 722/782 (92%), Gaps = 13/782 (2%)
Strand=Plus/Plus
Query 68 CCTGAAACTTATCTTCACGACACAACGAGACcaa-aaaaaaaag-aaa-a-t-atttcaa 122
||||||||||||||||||| || || ||||||| || |||||| ||| | | |||||||
Sbjct 147 CCTGAAACTTATCTTCACGGCATAATAAGACCAAGAAGAAAAAGAAAACATTAATTTCAA 206
Query 123 tcaaagcaaaaca-a-aaacaaaaaaTAGAGAGATCAGTGAATCAATTTTGGAGGAGAAA 180
|||||||||||| | | | ||||||||||||| ||||||||||||| || |||||||
Sbjct 207 CCAAAGCAAAACAGAGAGA-AAAAAATAGAGAG---AGTGAATCAATTTCGGTGGAGAAA 262
Query 181 GAAAAGAATGGAGCAGCCGTACGTGTATGCATACCCACAAGGCACAGGGCCTTCGGGACC 240
|| |||||||||||||||||||||||| |||||||| ||||| | || || |||||| |
Sbjct 263 GAGAAGAATGGAGCAGCCGTACGTGTACGCATACCCGCAAGGTAGTGGCCCCTCGGGAGC 322
Query 241 TCCGCCTCCACAAGCCGGAGGAGTGATAGTGGATCCAAGGTACTGCGCTCCTTACCCTGT 300
|||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct 323 TCCGACTCCACAAGCCGGAGGAGTGGTAGTGGATCCAAAGTACTGCGCTCCTTACCCTAT 382
Query 301 AGATCTGGCGATCGTACGGAAGATGATGAAGTTGACGGACGGCAACTTT-GTGATAACGG 359
|||| ||||||||||||||||||||||| ||| ||||||||||| ||| ||||||||||
Sbjct 383 AGATATGGCGATCGTACGGAAGATGATGTCGTTAACGGACGGCAA-TTTCGTGATAACGG 441
Query 360 ACGTCAACGGAAACCTGCTGTTCAAGGTGAAGGAACCGGTGTTTGGTCTTCACGACAAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 442 ACGTCAACGGAAACCTGCTGTTCAAGGTGAAGGAACCGGTGTTTGGTCTCCACGACAAGA 501
Query 420 GGATCTTGCTGGATGGTTCTGGTAATCCGGTCGTGACTTTGAGAGAAAAGATGGTGAGCA 479
|| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 502 GGGTCTTGCTGGATGGTTCTGGTACTCCGGTCGTCACTTTGAGAGAAAAGATGGTGAGCA 561
Query 480 TGCATGACAGATGGCAAGTGTTTAGAGGAGGGAGCACAGAGCAGCGTGATCTGCTTTACA 539
|||||||||| ||||||||||||||||||||||| || || |||||||||||||| ||||
Sbjct 562 TGCATGACAGGTGGCAAGTGTTTAGAGGAGGGAGTACGGATCAGCGTGATCTGCTGTACA 621
Query 540 CGGTGAAGAGATCGTCGATGCTTCAGCTAAAGACAAAACTTGATGTGTTTTTGGGACACA 599
||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 622 CGGTGAAAAGATCGTCGATGCTTCAGCTAAAGACCAAACTCGATGTGTTTTTGGGACACA 681
Query 600 ACAAAGATGAGAAGAGATGTGACTTCAGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTG 659
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 682 ACAAAGATGAGAAGAGATGTGATTTCAGAGTCAAAGGGAGTTGGCTCGAGCGTTCTTGTG 741
Query 660 TTGTTTACGCCGGCGAATCTGACGCCATTGTTGCCCAAATGCACAGGAAGCACACAGTGC 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 742 TTGTTTACGCCGGCGAATCTGACGCCATTGTTGCCCAAATGCACAGGAAGCACACGGTGC 801
Query 720 AGAGCGTATTTTTGGGAAAAGACAATTTCTCAGTGACGGTTTATCCAAACGTCGATTATG 779
|||||||||| |||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 802 AGAGCGTATTCTTGGGAAAAGACAACTTCTCGGTGACTGTTTATCCAAACGTCGATTATG 861
Query 780 CCTTCATCGCCTCTCTCGTCGTCATTCTTGATGACGTCAACCGTGAAGACCGCACCGCCT 839
|||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||
Sbjct 862 CCTTCATCGCCTCTCTCGTCGTCATTCTCGATGACGTCAACCGCGAAGACCGCGCCGCCT 921
Query 840 GA 841
||
Sbjct 922 GA 923
Score = 75.0 bits (40), Expect = 1e-12
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Plus
Query 1 ttttttt-GTTTGTTCTTAGAGGAAATCTTTATCTTGGAATCTT 43
||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTTTTTGGTTTGTTCTTAGAGGAAATCTTTATCTTGGAATCTT 44
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5