BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486894
Length=3680
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01730.1 | Symbols: WAVE3, ATSCAR4, SCAR4 | SCAR family prot... 4710 0.0
AT5G01732.1 | Symbols: | other RNA | chr5:272839-276426 FORWAR... 3035 0.0
> AT5G01730.1 | Symbols: WAVE3, ATSCAR4, SCAR4 | SCAR family protein
4 | chr5:272832-277561 REVERSE LENGTH=3700
Length=3700
Score = 4710 bits (2550), Expect = 0.0
Identities = 3232/3542 (91%), Gaps = 123/3542 (3%)
Strand=Plus/Plus
Query 164 CTG-AGCTCGAGGTCATGCTTTGGCCATGCGTCTCCAACAGCTCGAAGCTGACTTTCCTG 222
||| ||| |||||||||| |||||| |||||||||||||| |||||||| ||||| |||
Sbjct 203 CTGCAGCACGAGGTCATGGTTTGGCGATGCGTCTCCAACACCTCGAAGCAGACTTCCCTT 262
Query 223 CTA-TTGAGATACCCATTCTCTCTCAAACCCATCATTCTACATTCTTTTATGATTCAGGC 281
| | |||||||||||||||||||||||||| ||||||||||||||||||||| | ||
Sbjct 263 C-AGTTGAGATACCCATTCTCTCTCAAACCGATCATTCTACATTCTTTTATG----A-GC 316
Query 282 CA-GCTTCAAATGGCATTCTAATCTGCAAATAAAAGAAGACCTGATTTCCCCACGCAACT 340
|| |||| ||||||||||| ||||||||| |||||||||| ||||||||||||| ||||
Sbjct 317 CAGGCTTGGAATGGCATTCTGATCTGCAAACAAAAGAAGACTTGATTTCCCCACGGAACT 376
Query 341 TGCCTCATTGTATAATGGATTCATACCAGGAATGCCGTGCTCCGCCGCAGCTCTTCCTTC 400
|||||| ||||||||||||||| ||| ||||||||| || |||||||||||| |||||||
Sbjct 377 TGCCTCGTTGTATAATGGATTCGTACGAGGAATGCCATGGTCCGCCGCAGCTTTTCCTTC 436
Query 401 TCGACAAGTTTGATGTTGCTGGGTCTGGATCATGCTTGAAGCGTTACTCTGATCCATCTT 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 TCGACAAGTTTGATGTTGCTGGGTCTGGATCATGCTTGAAGCGTTACTCTGATCCATCTT 496
Query 461 TATTGAAGACGCATACTGCATCAGCAGTAGTAGCAACATCAAAACTCAGCAAAGATGAGC 520
|||||||||| |||||| |||||||||||||||||||||| |||||| | |||||| |||
Sbjct 497 TATTGAAGACACATACTACATCAGCAGTAGTAGCAACATCCAAACTCGGGAAAGATAAGC 556
Query 521 GGCCACGTAAATCAAAGAAGAAAGGATCACACACAACTAGTAAAGAGACCCCTGAGGATT 580
| | |||| ||||||||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 557 GACTACGTCAATCAAAGAAGAAAGGATCTCACACAACTATTAAAGAGACGCCTGAGGATT 616
Query 581 --C--A-A-CACATGCCAAGTTGCATCAGCTATTCTTTTTGGAGCACGCTGAGAACGGAC 634
| | | ||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 617 CACGGACATCACATGCCAAGTTGCATCAGCTATTCTTTTTGGAGCATGTTGAGAACGGAC 676
Query 635 ACAAAAACCCTGAATTCCATGTGAAACTGAAGAAAAGACAGTTGAATCGACCTCCGATTA 694
||| ||| ||||||||||||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct 677 ACAGAAATCCTGAATTCCATGTGAAACTGAAGAGAAGACAGCTGAATGGACCTCCGATTA 736
Query 695 ACTCAAGCTCCGGGACAAGTTACATGGAGAAATTCCTCAAGAATTCTTCGCCATATTGTG 754
|||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 737 ACTCAAGCTCTGGGGCAAGTTACATGGAGAAATTCCTCAAGAATTCTTCACCATACTGTG 796
Query 755 AAAGAGTTCATGGGACTCTGGATCAATCATCTCCGGCAATGGAAACTGAAGTTACAGTAT 814
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 797 AAAGAGTTCATGGGACTATGGATCAGTCATCTCCGGCAATGGAAACTGAAGTTACAGTAT 856
Query 815 GCAGCGTACAAGAAGACTTACCAAAACCTTCCTTAGTTTA-TCCAAACAGTGGAGACACT 873
|||| | ||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||
Sbjct 857 GCAGTGAACAAGAAGACTTACCAATACCTTCCTTAGTTTATTCC-AACAGTGGAGGCACT 915
Query 874 AGAAAATACAATGAGATGGAGATGGAATCCATTACTGATGATGAAAGAATTGAAATTCCT 933
||||||||||||||||||||||| ||||||||| ||| | |||||| | |||||||||||
Sbjct 916 AGAAAATACAATGAGATGGAGATAGAATCCATTGCTGGTCATGAAATACTTGAAATTCCT 975
Query 934 TTTGTTCCTCATGAGATTACGGTTGATGAGAAGTCTTTACCGAATATAGAGGAAGCACCA 993
||||||||||| |||||||||||| ||||| | | | | |||||
Sbjct 976 TTTGTTCCTCACGAGATTACGGTTAATGAG-A------A--G----T--------CACCA 1014
Query 994 GTGGTTTGTTTAGAAAGTAGCTCTTCTGTGAATTTGTGTTGCAAGACGAACAATGACGCA 1053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 GTGGTTTGTTTAGAAAGTAGCTCTTCTGTGAATTTGTGTTGCAAGACGAACAATGACGCA 1074
Query 1054 GATGCACCTGCTTCCACGGAGTCGGAAGCAAAGGAAGCAGGAAGTGATGACAAGGCTGGC 1113
||| ||||||||||||||||||| || | |||||||||||| |||||||||||||||||
Sbjct 1075 GATTCACCTGCTTCCACGGAGTCAGAGGTAAAGGAAGCAGGGAGTGATGACAAGGCTGGA 1134
Query 1114 TGTGACCTTGGATTTCCAGGATTTGGTCAGCCGCAGATCTGTACTAATGCAGAAGTGACT 1173
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1135 TGTGACCATGGATTTCCAGGATTTGGTCAGCCGCAGATCTGTACTAATGCAGAAGTGAAT 1194
Query 1174 CAAACAGAGGTTCTGACTCAGTTTTCTAATGTTTTGCACCACTCACCGGAGGAAGGAGAA 1233
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1195 CAAACAGAGGTTCTGACTCAGTTTTCTAATGTTTTGCGCCACTCACCGGAGGAAGGAGAA 1254
Query 1234 TCTAGTCTTTTGTGCACTGATATCCAGAGAGCTTCTCCTGAAAGTAAACCACATAAAGCT 1293
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 TCTAGTCTTTTGTGTACTGATATCCAGAGAGCTTCTCCTGAAAGTAAACCACATAAAGCT 1314
Query 1294 GAAGAGGCTGCTGTAGAATTAGACAAATCATTTTCCCAGATGACACCGGACATAGATTCC 1353
||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||
Sbjct 1315 GAAGAGGCTGCTGTAGATTTAGACGAGTCATTTTCCCAGATGACACCGGACATAGATTCC 1374
Query 1354 GCAGGCATGGAGACTCTGGAGCTCAAACAAACACCTTTCAGTTTGTCTTGTTACGAGAAT 1413
|||||||||| |||||||||| || |||||||||||||||||||||||| ||||||| |
Sbjct 1375 GCAGGCATGGGGACTCTGGAGATCTTACAAACACCTTTCAGTTTGTCTTGCTACGAGAGT 1434
Query 1414 CCTCCAAATCTTCCCGAAGATTCTGAAAGTCACTTGGAGCTTCAGTCCAATAAAGCAAGT 1473
||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||
Sbjct 1435 CCTGCAAATCTTCCCGAAGATTCTGGAAGTCACTTGGAGCTTCAGTCCAAT--A--AA-- 1488
Query 1474 GCTGATGAAATTGAGTTGAAATCATCTGAAGCTTGTGAGGTCTTTGAAGTCAGAAGAGAT 1533
|| || | || ||||||||||||||||||||||||||||||| |||
Sbjct 1489 GC------AA---A--TG-------CTGAAGCTTGTGAGGTCTTTGAAGTCAGAAGGGAT 1530
Query 1534 CCTATGCTTAATATTTCCCGTGAAACTTATCTGTTAATGCTT-----A----CACAGGAC 1584
|| |||||||||||||||| ||||||| |||| |||| | || | ||||||||
Sbjct 1531 CCCATGCTTAATATTTCCCCTGAAACTCATCTTTTAAAGGTTACACAAGTGCCACAGGAC 1590
Query 1585 GCATCTGAGGGTGGGACCAATGATGTTCATTCTCAACATGTTTTCAGTGTGGAGGCTGCA 1644
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1591 GCATATGAGGGTGGGACCAATGATGTTCATTCTCAACATGTTTTCAGTGTGGAGACTGCA 1650
Query 1645 TCTGAGATATCTTTGAGTGCTTTAGTGGAAGACCAGTTCTCTTCCATAACCAATCAAGAT 1704
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1651 TCTGAGATATCTGTAAGTGCTTTAGTGGAAGACCAGTTCTCTTCCATAACCAATCAAGAG 1710
Query 1705 ATAGCGGCTCTGGAATCCGAGGACATTTCTTCTGAAGCTGGTCATTTCACTCCAGATACC 1764
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1711 ATAGAGGCTCTGGAATCCGAGGACATTTCTTCTGAAGCTGGTCATTTCATTCCAGATACC 1770
Query 1765 AAAACGAGTTTAAATGAAACACCAGTGGCATTGGAGTCTGATTATCTTCTTCCAAATCAG 1824
|||| |||||||||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 1771 AAAAAGAGTTTAAATGAAACATCAGTGGCATTGGAGTCCGATTTTCTTCTTCCAAATCAT 1830
Query 1825 TACATTAGCACATTTGAAAACTTTGAAGATTTAACTCTGGCTATTGATGCACAGGATTAT 1884
||||||||||||||||| ||||||||||||||| ||||| || ||||||||||||||||
Sbjct 1831 TACATTAGCACATTTGACAACTTTGAAGATTTATCTCTGTCTGCTGATGCACAGGATTAT 1890
Query 1885 GCTGTCCTAGTAA-AAGATGAAACGAACTCCCAAGACGGATCTTCCATGAATCCTGAACA 1943
|||| || | || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1891 GCTGCCCCA-AAAGAAGATGAAACGAACTCCCAAGACGGATCTTCCATGAATCCTGCACA 1949
Query 1944 GTCTAAACACATTTCAACTTCTGAAATCAGTTCAGAAAACGGAACTCTGATGTCAGATAC 2003
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1950 GTCAAAACACATTTCAACTTCTGAAATCAGTTCAGAAAATGGAACTCTGATGTCAGATAC 2009
Query 2004 TCCAAGAGATCTTCACACAGGATACGGGAGCCTCTCAGCCTCATCTTTTCTGGAAGACGC 2063
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2010 TCCAAGAGATCTTCACACAGGATACGGGAGCCTCTCAGCCTCATCTTGTCTGGAAGACGG 2069
Query 2064 ATTGGCCAACCCTGTTCTGGCTGAGATATCATCATATTTTGGGCAGGAGGATCCACAAAC 2123
|||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 2070 ATTGGCCAACCCTGATCTGGCTGAGATATCATCATATTCTGGACAGGAGGATCCACAAAC 2129
Query 2124 CATGTCTATTGTTTCAGATGATAATAATGACCCTGAGGTACCAATTCCTGATGGTACTTA 2183
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 2130 CATGTCTATTGTTTCAGATGATAGTAGTGACCCTGAGGTACCAATTCCTGATGGTACTTG 2189
Query 2184 TTTTGCAGGTGATGGT-GATCACGATAACCAGACTGGCCTGAATAATAAGGCCAATGAGA 2242
||||||||||||| || ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2190 TTTTGCAGGTGAT-GTCGATCACGATAACCAGACTGGCCTGAATAATAAGGCCATTGAGA 2248
Query 2243 CCGTGTCCCA-AATAGACTTGGAAACTATTAGTAATCCACATGAGAGTCTTTTAGGTACT 2301
||||| |||| || ||| ||||||||||||||| ||||||| |||||||||||||||||
Sbjct 2249 CCGTGCCCCAGAA-AGAATTGGAAACTATTAGTGATCCACAGGAGAGTCTTTTAGGTACA 2307
Query 2302 GAAGAATGTCTTTCATCTGAGTATTGCTTACAGATACAGAACCAAGGGCAAGAAAGTCCA 2361
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2308 GAAGAATGTCTTTCATCTGAGTATTGCTTACAGATACAGAACCAAAGGCAAGAAAGTCCA 2367
Query 2362 TCGGAAACAGGGTCAGCAAATTCAATAACATTATCAGCCGAGTCTCCTCCTACACAAAAT 2421
|| |||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 2368 TCAGAAACAGGGTCAGCAAATTCAAGAACATCATCAGACGAGTCTCCTCCTACACAAAAT 2427
Query 2422 GGATCTGTTGGTGTTCAAAATTCACCATTGGAGGAAGCGTTAACATGCAACGAAAAGGTT 2481
||||||||||||||||||| |||| | | || | | | | |||
Sbjct 2428 GGATCTGTTGGTGTTCAAAGTTCA-C-----------C-TT----T---A-G---ATGTT 2463
Query 2482 TTCCCTTCGAGCATAACTGAAATAGAAGCTCTTCATGCACCACACCAGGAAACTTTCACA 2541
|| ||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2464 TTTCCTTCAAGCATAACTGAAATAGAAGCTCTTCATGCACCATACCAGGAAATTTTCACA 2523
Query 2542 CCATTAAATGATCATATCTCTGAGTCTGTTCTTTCCACCGGTCTGACTGATGAAGAAGAT 2601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2524 TCATTAAATGATCATATCTCTGAGTCTGTTCTTTCCAAGGGTCTGACTGATGAAGAAGAT 2583
Query 2602 TTCTTGGACGTGTCCCCTGAATCCATGGTACCCTTCTCCACGTCCCTCCATGAAACACCT 2661
|||||| |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 2584 TTCTTGAACGTATCCCCTGAGTCCATACTACCCCTCTCCACGTCCCTCCATGAAACACCT 2643
Query 2662 CAGGCAAATCCGGAGATAACACCTCCGCTTCCGCCTCTTCCTCCGACACAATGGTGGATG 2721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2644 CAGGCAAATCCGGAGATAACACCTCCGCTTCCGCCTCTTCCTCCGACACAATGGTGGATG 2703
Query 2722 GGGAAGCTGGTTGAATCAACCGAAATGCCTTCACTTTCAGGCAGTGGAAACAACAGTTTC 2781
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 2704 GGGAAGCTGGTTGAATCAACCGAAATGCCATCACTTGCAGGCAGTGGAAACAACAGTTTC 2763
Query 2782 AACATCCATAGGGATGAAAACACACAGAATGGATCAGTTCAAGCGAACGAGGCACAGTAT 2841
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2764 AACATCCAGAGGGATGAAAACACACAGAATGGATCAGTTCAAGCGAACGAGGCACAATAT 2823
Query 2842 CCATCAGAAGTGTCGGTTACGGATGGTGAAAACCACAATTCTCATGTTTATACAGAAGAA 2901
|||||||||||||||||||| |||||||||||||| |||| |||| ||||||||||||||
Sbjct 2824 CCATCAGAAGTGTCGGTTACAGATGGTGAAAACCATAATTTTCATATTTATACAGAAGAA 2883
Query 2902 TCTAAAGCAACCGAGGAACAGTCTCCTTCAGCAGTCAATGGAACAAGCGACACCTATATG 2961
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 2884 TCTAAAGCAACCGAGGAACAGTCTCCTTCAGGAGTCAATGGGACAAGCGACACCTATATG 2943
Query 2962 GAAAGTAAACACAAGTTTTTAAATAGAAATCAGGAGGATTCATTTGCTTTGGAAGAATCG 3021
|||||||||||||||| ||||||||||| || ||||||||||||| |||||| |||||||
Sbjct 2944 GAAAGTAAACACAAGTGTTTAAATAGAACTCCGGAGGATTCATTTTCTTTGGCAGAATCG 3003
Query 3022 GCTCAAGGCTTAGAAGGGGACTGGAGGACTGAAGCAATGGCACTTGAATGGTTTAGTCAG 3081
|| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3004 GCCCAAGGCTTAGAAGCTGACTGGAGGACTGAAGCAATGGCACTTGAATGGTTTAGTCAG 3063
Query 3082 AACTTAAGAGAGCATAACAATCGTCACCCTGCAAAGTTAGGAGAGGAACAACCTCAGGTT 3141
|||||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||
Sbjct 3064 AACTTAAGAGAGCATAACAATCCCCACCCTGCAAAGTTAGAAGAGGAAGAGCCTCAGGTT 3123
Query 3142 GATCATCCACTAGAACAACCAGGACAAAT-AGAATTTCGACAAACCTTACGAGACAATAA 3200
||||| ||||||||| |||| ||||||| | |||||||||||||||| |||||||||||
Sbjct 3124 GATCACCCACTAGAAAAACCTGGACAAACCA-AATTTCGACAAACCTTGCGAGACAATAA 3182
Query 3201 CTCATATGAA-CAGAATCTGAAAGCTGGAAAGCTCAAAAGAGACGAGGATACGCTTGTTA 3259
||||||| || ||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 3183 CTCATAT-AATCAGAATCAGAAAGCTGGAAAGCTTAAAAGAGACGAGGATACGCTTGTTA 3241
Query 3260 TTGGCATTGACAGAAGCATGTTGAGAAAAGTATCTGAACGGGA-CAGGACACAAGTTGGA 3318
||||||||||||||||||||||||| |||||||||||| |||| ||||||||| ||||||
Sbjct 3242 TTGGCATTGACAGAAGCATGTTGAGGAAAGTATCTGAA-GGGAACAGGACACACGTTGGA 3300
Query 3319 GCTAGATTGGACGAGAATGATTCACTACTAGAGATCATACGGAGCAAGTCGTTCAACCTG 3378
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3301 GCTCGAGTGGACGAGAATGATTCACTACTAGAGATCATACGGAGCAAGTCGTTCAACCTG 3360
Query 3379 AGACCAGCAGATGCCTCAGGGAGACCAAACTTTCAAGTAGCTGTTCCCAAAACCAACTTA 3438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3361 AGACCAGCAGATGCCTCAGGGAGACCAAACTTTCAAGTAGCTGTTCCCAAAACCAACTTG 3420
Query 3439 AAGGTGGCTGCAATTCTAGAGAAAGCCAACACTCTTCGCCAGGCAATGGCAGGAAGTGAC 3498
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3421 AAGGTGGCTGCAATTCTAGAGAAAGCCAACACTCTTCGCCAGGCAATGGCGGGAAGTGAC 3480
Query 3499 GACGAGCACGATACAGATAGCTGGAGCGAGTGAGTCGTTGAATCAAATCTCCAGGTAACA 3558
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 3481 GACGAGCACGATTCAGATAGCTGGAGCGAGTGAGTCGTTGAATCAAATCTGCAGGTAACA 3540
Query 3559 AACATATAGATGACAATACTCACACTCTGTATAGAAAAATTGTTCTCAAATTGTATGTAT 3618
||||||||||| || | || ||||||||||| |||| |||| |||||||||||
Sbjct 3541 AACATATAGAT--CA---C--AC--TCTGTATAGAAGAATT---CTCACATTGTATGTAT 3588
Query 3619 TCTTTGAATCTCGTAATGTTTTTATTGCTGTCTTTTTGACACATTGTAAGTCGCTCTGTT 3678
||| || ||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 3589 TCTCACAA----GTAATGTTTTTATTGCTGTATTTTTGACACATTGTAAGTCACTCTGTT 3644
Query 3679 TT 3680
||
Sbjct 3645 TT 3646
Score = 289 bits (156), Expect = 2e-76
Identities = 164/168 (98%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 1 ATGGCATTGACGAGATACCAGATACGCAACGAGTACGGCTTGGCTGATAAGGAGCTTTAC 60
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct 1 ATGGCATTGACGAGATACCAGATACGGAACGAGTACGGCTTAGCGGATAAGGAGCTCTAC 60
Query 61 CAATCCGCCGATAAGGAGGATCCTGAAGCTTTGCTCGAAGCTGCTTCCATGGCTGGTCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAATCCGCCGATAAGGAGGATCCTGAAGCTTTGCTCGAAGCTGCTTCCATGGCTGGTCTC 120
Query 121 GTCGGCGTTTTGCGCCAGCTTGGCGACCTCTCTGAGTTTGCTGCTGAG 168
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTCGGCGTTTTGCGCCAGCTTGGCGACCTCTCTGAGTTTGCTGCTGAG 168
> AT5G01732.1 | Symbols: | other RNA | chr5:272839-276426 FORWARD
LENGTH=3426
Length=3426
Score = 3035 bits (1643), Expect = 0.0
Identities = 2088/2289 (91%), Gaps = 86/2289 (4%)
Strand=Plus/Minus
Query 836 CAAAACCTTCCTTAGTTTA-TCCAAACAGTGGAGACACTAGAAAATACAATGAGATGGAG 894
||| ||||||||||||||| ||| |||||||||| |||||||||||||||||||||||||
Sbjct 3023 CAATACCTTCCTTAGTTTATTCC-AACAGTGGAGGCACTAGAAAATACAATGAGATGGAG 2965
Query 895 ATGGAATCCATTACTGATGATGAAAGAATTGAAATTCCTTTTGTTCCTCATGAGATTACG 954
|| ||||||||| ||| | |||||| | |||||||||||||||||||||| |||||||||
Sbjct 2964 ATAGAATCCATTGCTGGTCATGAAATACTTGAAATTCCTTTTGTTCCTCACGAGATTACG 2905
Query 955 GTTGATGAGAAGTCTTTACCGAATATAGAGGAAGCACCAGTGGTTTGTTTAGAAAGTAGC 1014
||| ||||| | | | | ||||||||||||||||||||||||||
Sbjct 2904 GTTAATGAG-A------A--G----T--------CACCAGTGGTTTGTTTAGAAAGTAGC 2866
Query 1015 TCTTCTGTGAATTTGTGTTGCAAGACGAACAATGACGCAGATGCACCTGCTTCCACGGAG 1074
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2865 TCTTCTGTGAATTTGTGTTGCAAGACGAACAATGACGCAGATTCACCTGCTTCCACGGAG 2806
Query 1075 TCGGAAGCAAAGGAAGCAGGAAGTGATGACAAGGCTGGCTGTGACCTTGGATTTCCAGGA 1134
|| || | |||||||||||| ||||||||||||||||| ||||||| |||||||||||||
Sbjct 2805 TCAGAGGTAAAGGAAGCAGGGAGTGATGACAAGGCTGGATGTGACCATGGATTTCCAGGA 2746
Query 1135 TTTGGTCAGCCGCAGATCTGTACTAATGCAGAAGTGACTCAAACAGAGGTTCTGACTCAG 1194
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2745 TTTGGTCAGCCGCAGATCTGTACTAATGCAGAAGTGAATCAAACAGAGGTTCTGACTCAG 2686
Query 1195 TTTTCTAATGTTTTGCACCACTCACCGGAGGAAGGAGAATCTAGTCTTTTGTGCACTGAT 1254
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2685 TTTTCTAATGTTTTGCGCCACTCACCGGAGGAAGGAGAATCTAGTCTTTTGTGTACTGAT 2626
Query 1255 ATCCAGAGAGCTTCTCCTGAAAGTAAACCACATAAAGCTGAAGAGGCTGCTGTAGAATTA 1314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2625 ATCCAGAGAGCTTCTCCTGAAAGTAAACCACATAAAGCTGAAGAGGCTGCTGTAGATTTA 2566
Query 1315 GACAAATCATTTTCCCAGATGACACCGGACATAGATTCCGCAGGCATGGAGACTCTGGAG 1374
||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2565 GACGAGTCATTTTCCCAGATGACACCGGACATAGATTCCGCAGGCATGGGGACTCTGGAG 2506
Query 1375 CTCAAACAAACACCTTTCAGTTTGTCTTGTTACGAGAATCCTCCAAATCTTCCCGAAGAT 1434
|| |||||||||||||||||||||||| ||||||| |||| |||||||||||||||||
Sbjct 2505 ATCTTACAAACACCTTTCAGTTTGTCTTGCTACGAGAGTCCTGCAAATCTTCCCGAAGAT 2446
Query 1435 TCTGAAAGTCACTTGGAGCTTCAGTCCAATAAAGCAAGTGCTGATGAAATTGAGTTGAAA 1494
|||| ||||||||||||||||||||||||| | || || || | ||
Sbjct 2445 TCTGGAAGTCACTTGGAGCTTCAGTCCAAT--A--AA--GC------AA---A--TG--- 2406
Query 1495 TCATCTGAAGCTTGTGAGGTCTTTGAAGTCAGAAGAGATCCTATGCTTAATATTTCCCGT 1554
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
Sbjct 2405 ----CTGAAGCTTGTGAGGTCTTTGAAGTCAGAAGGGATCCCATGCTTAATATTTCCCCT 2350
Query 1555 GAAACTTATCTGTTAATGCTT-----A----CACAGGACGCATCTGAGGGTGGGACCAAT 1605
|||||| |||| |||| | || | |||||||||||| ||||||||||||||||
Sbjct 2349 GAAACTCATCTTTTAAAGGTTACACAAGTGCCACAGGACGCATATGAGGGTGGGACCAAT 2290
Query 1606 GATGTTCATTCTCAACATGTTTTCAGTGTGGAGGCTGCATCTGAGATATCTTTGAGTGCT 1665
||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 2289 GATGTTCATTCTCAACATGTTTTCAGTGTGGAGACTGCATCTGAGATATCTGTAAGTGCT 2230
Query 1666 TTAGTGGAAGACCAGTTCTCTTCCATAACCAATCAAGATATAGCGGCTCTGGAATCCGAG 1725
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 2229 TTAGTGGAAGACCAGTTCTCTTCCATAACCAATCAAGAGATAGAGGCTCTGGAATCCGAG 2170
Query 1726 GACATTTCTTCTGAAGCTGGTCATTTCACTCCAGATACCAAAACGAGTTTAAATGAAACA 1785
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 2169 GACATTTCTTCTGAAGCTGGTCATTTCATTCCAGATACCAAAAAGAGTTTAAATGAAACA 2110
Query 1786 CCAGTGGCATTGGAGTCTGATTATCTTCTTCCAAATCAGTACATTAGCACATTTGAAAAC 1845
|||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| |||
Sbjct 2109 TCAGTGGCATTGGAGTCCGATTTTCTTCTTCCAAATCATTACATTAGCACATTTGACAAC 2050
Query 1846 TTTGAAGATTTAACTCTGGCTATTGATGCACAGGATTATGCTGTCCTAGTAA-AAGATGA 1904
|||||||||||| ||||| || |||||||||||||||||||| || | || |||||||
Sbjct 2049 TTTGAAGATTTATCTCTGTCTGCTGATGCACAGGATTATGCTGCCCCAA-AAGAAGATGA 1991
Query 1905 AACGAACTCCCAAGACGGATCTTCCATGAATCCTGAACAGTCTAAACACATTTCAACTTC 1964
||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 1990 AACGAACTCCCAAGACGGATCTTCCATGAATCCTGCACAGTCAAAACACATTTCAACTTC 1931
Query 1965 TGAAATCAGTTCAGAAAACGGAACTCTGATGTCAGATACTCCAAGAGATCTTCACACAGG 2024
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1930 TGAAATCAGTTCAGAAAATGGAACTCTGATGTCAGATACTCCAAGAGATCTTCACACAGG 1871
Query 2025 ATACGGGAGCCTCTCAGCCTCATCTTTTCTGGAAGACGCATTGGCCAACCCTGTTCTGGC 2084
|||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||
Sbjct 1870 ATACGGGAGCCTCTCAGCCTCATCTTGTCTGGAAGACGGATTGGCCAACCCTGATCTGGC 1811
Query 2085 TGAGATATCATCATATTTTGGGCAGGAGGATCCACAAACCATGTCTATTGTTTCAGATGA 2144
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1810 TGAGATATCATCATATTCTGGACAGGAGGATCCACAAACCATGTCTATTGTTTCAGATGA 1751
Query 2145 TAATAATGACCCTGAGGTACCAATTCCTGATGGTACTTATTTTGCAGGTGATGGT-GATC 2203
|| || |||||||||||||||||||||||||||||||| |||||||||||||| | ||||
Sbjct 1750 TAGTAGTGACCCTGAGGTACCAATTCCTGATGGTACTTGTTTTGCAGGTGATG-TCGATC 1692
Query 2204 ACGATAACCAGACTGGCCTGAATAATAAGGCCAATGAGACCGTGTCCCA-AATAGACTTG 2262
||||||||||||||||||||||||||||||||| |||||||||| |||| || ||| |||
Sbjct 1691 ACGATAACCAGACTGGCCTGAATAATAAGGCCATTGAGACCGTGCCCCAGAA-AGAATTG 1633
Query 2263 GAAACTATTAGTAATCCACATGAGAGTCTTTTAGGTACTGAAGAATGTCTTTCATCTGAG 2322
|||||||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1632 GAAACTATTAGTGATCCACAGGAGAGTCTTTTAGGTACAGAAGAATGTCTTTCATCTGAG 1573
Query 2323 TATTGCTTACAGATACAGAACCAAGGGCAAGAAAGTCCATCGGAAACAGGGTCAGCAAAT 2382
|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 1572 TATTGCTTACAGATACAGAACCAAAGGCAAGAAAGTCCATCAGAAACAGGGTCAGCAAAT 1513
Query 2383 TCAATAACATTATCAGCCGAGTCTCCTCCTACACAAAATGGATCTGTTGGTGTTCAAAAT 2442
|||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1512 TCAAGAACATCATCAGACGAGTCTCCTCCTACACAAAATGGATCTGTTGGTGTTCAAAGT 1453
Query 2443 TCACCATTGGAGGAAGCGTTAACATGCAACGAAAAGGTTTTCCCTTCGAGCATAACTGAA 2502
||||| || || | | || | || || ||| ||||||||||||
Sbjct 1452 TCACCTTT--AG-ATG--TT----T------------TT--CC-TTCAAGCATAACTGAA 1417
Query 2503 ATAGAAGCTCTTCATGCACCACACCAGGAAACTTTCACACCATTAAATGATCATATCTCT 2562
||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||
Sbjct 1416 ATAGAAGCTCTTCATGCACCATACCAGGAAATTTTCACATCATTAAATGATCATATCTCT 1357
Query 2563 GAGTCTGTTCTTTCCACCGGTCTGACTGATGAAGAAGATTTCTTGGACGTGTCCCCTGAA 2622
|||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||
Sbjct 1356 GAGTCTGTTCTTTCCAAGGGTCTGACTGATGAAGAAGATTTCTTGAACGTATCCCCTGAG 1297
Query 2623 TCCATGGTACCCTTCTCCACGTCCCTCCATGAAACACCTCAGGCAAATCCGGAGATAACA 2682
||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 TCCATACTACCCCTCTCCACGTCCCTCCATGAAACACCTCAGGCAAATCCGGAGATAACA 1237
Query 2683 CCTCCGCTTCCGCCTCTTCCTCCGACACAATGGTGGATGGGGAAGCTGGTTGAATCAACC 2742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1236 CCTCCGCTTCCGCCTCTTCCTCCGACACAATGGTGGATGGGGAAGCTGGTTGAATCAACC 1177
Query 2743 GAAATGCCTTCACTTTCAGGCAGTGGAAACAACAGTTTCAACATCCATAGGGATGAAAAC 2802
|||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1176 GAAATGCCATCACTTGCAGGCAGTGGAAACAACAGTTTCAACATCCAGAGGGATGAAAAC 1117
Query 2803 ACACAGAATGGATCAGTTCAAGCGAACGAGGCACAGTATCCATCAGAAGTGTCGGTTACG 2862
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1116 ACACAGAATGGATCAGTTCAAGCGAACGAGGCACAATATCCATCAGAAGTGTCGGTTACA 1057
Query 2863 GATGGTGAAAACCACAATTCTCATGTTTATACAGAAGAATCTAAAGCAACCGAGGAACAG 2922
|||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1056 GATGGTGAAAACCATAATTTTCATATTTATACAGAAGAATCTAAAGCAACCGAGGAACAG 997
Query 2923 TCTCCTTCAGCAGTCAATGGAACAAGCGACACCTATATGGAAAGTAAACACAAGTTTTTA 2982
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 996 TCTCCTTCAGGAGTCAATGGGACAAGCGACACCTATATGGAAAGTAAACACAAGTGTTTA 937
Query 2983 AATAGAAATCAGGAGGATTCATTTGCTTTGGAAGAATCGGCTCAAGGCTTAGAAGGGGAC 3042
||||||| || ||||||||||||| |||||| ||||||||| ||||||||||||| |||
Sbjct 936 AATAGAACTCCGGAGGATTCATTTTCTTTGGCAGAATCGGCCCAAGGCTTAGAAGCTGAC 877
Query 3043 TGGAGGACTGAAGCAATGGCACTTGAATGGTTTAGTCAGAACTTAAGAGAGCATAACAAT 3102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 876 TGGAGGACTGAAGCAATGGCACTTGAATGGTTTAGTCAGAACTTAAGAGAGCATAACAAT 817
Query 3103 CGTCACCCT 3111
| ||||||
Sbjct 816 CCCCACCCT 808
Score = 233 bits (126), Expect = 8e-60
Identities = 146/156 (94%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 594 GTTGCATCAGCTATTCTTTTTGGAGCACGCTGAGAACGGACACAAAAACCCTGAATTCCA 653
||||||||||||||||||||||||||| | |||||||||||||| ||| |||||||||||
Sbjct 3179 GTTGCATCAGCTATTCTTTTTGGAGCATGTTGAGAACGGACACAGAAATCCTGAATTCCA 3120
Query 654 TGTGAAACTGAAGAAAAGACAGTTGAATCGACCTCCGATTAACTCAAGCTCCGGGACAAG 713
|||||||||||||| ||||||| ||||| |||||||||||||||||||||| ||| ||||
Sbjct 3119 TGTGAAACTGAAGAGAAGACAGCTGAATGGACCTCCGATTAACTCAAGCTCTGGGGCAAG 3060
Query 714 TTACATGGAGAAATTCCTCAAGAATTCTTCGCCATA 749
|||||||||||||||||||||||||||||| |||||
Sbjct 3059 TTACATGGAGAAATTCCTCAAGAATTCTTCACCATA 3024
Score = 215 bits (116), Expect = 3e-54
Identities = 176/202 (87%), Gaps = 16/202 (8%)
Strand=Plus/Minus
Query 3479 AGGCAATGGCAGGAAGTGACGACGAGCACGATACAGATAGCTGGAGCGAGTGAGTCGTTG 3538
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 233 AGGCAATGGCGGGAAGTGACGACGAGCACGATTCAGATAGCTGGAGCGAGTGAGTCGTTG 174
Query 3539 AATCAAATCTCCAGGTAACAAACATATAGATGACAATACTCACACTCTGTATAGAAAAAT 3598
|||||||||| |||||||||||||||||||| || | || ||||||||||| |||
Sbjct 173 AATCAAATCTGCAGGTAACAAACATATAGAT--CA---C--AC--TCTGTATAGAAGAAT 123
Query 3599 TGTTCTCAAATTGTATGTATTCTTTGAATCTCGTAATGTTTTTATTGCTGTCTTTTTGAC 3658
| |||| |||||||||||||| || ||||||||||||||||||| ||||||||
Sbjct 122 T---CTCACATTGTATGTATTCTCACAA----GTAATGTTTTTATTGCTGTATTTTTGAC 70
Query 3659 ACATTGTAAGTCGCTCTGTTTT 3680
|||||||||||| |||||||||
Sbjct 69 ACATTGTAAGTCACTCTGTTTT 48
Score = 211 bits (114), Expect = 4e-53
Identities = 119/121 (98%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 3361 AGCAAGTCGTTCAACCTGAGACCAGCAGATGCCTCAGGGAGACCAAACTTTCAAGTAGCT 3420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 AGC-AGTCGTTCAACCTGAGACCAGCAGATGCCTCAGGGAGACCAAACTTTCAAGTAGCT 414
Query 3421 GTTCCCAAAACCAACTTAAAGGTGGCTGCAATTCTAGAGAAAGCCAACACTCTTCGCCAG 3480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 GTTCCCAAAACCAACTTGAAGGTGGCTGCAATTCTAGAGAAAGCCAACACTCTTCGCCAG 354
Query 3481 G 3481
|
Sbjct 353 G 353
Score = 148 bits (80), Expect = 3e-34
Identities = 91/96 (95%), Gaps = 2/96 (2%)
Strand=Plus/Minus
Query 3185 CCTTACGAGACAATAACTCATATGAA-CAGAATCTGAAAGCTGGAAAGCTCAAAAGAGAC 3243
|||| |||||||||||||||||| || ||||||| ||||||||||||||| |||||||||
Sbjct 810 CCTTGCGAGACAATAACTCATAT-AATCAGAATCAGAAAGCTGGAAAGCTTAAAAGAGAC 752
Query 3244 GAGGATACGCTTGTTATTGGCATTGACAGAAGCATG 3279
||||||||||||||||||||||||||||||||||||
Sbjct 751 GAGGATACGCTTGTTATTGGCATTGACAGAAGCATG 716
Score = 130 bits (70), Expect = 1e-28
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand=Plus/Minus
Query 3279 GTTGAGAAAAGTATCTGAACGGG-ACAGGACACAAGTTGGAGCTAGATTGGACGAGAATG 3337
|||||| |||||||||||| ||| |||||||||| ||||||||| || ||||||||||||
Sbjct 638 GTTGAGGAAAGTATCTGAA-GGGAACAGGACACACGTTGGAGCTCGAGTGGACGAGAATG 580
Query 3338 ATTCACTACTAGAGATCATACGGAGCAAG 3366
|||||||||||||||||||||||||||||
Sbjct 579 ATTCACTACTAGAGATCATACGGAGCAAG 551
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 183259842779
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5