BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486896
Length=2296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:2... 3349 0.0
AT5G01715.1 | Symbols: | pseudogene, antisense mRNA to gene At... 641 0.0
> AT5G01720.1 | Symbols: | RNI-like superfamily protein | chr5:266723-270483
REVERSE LENGTH=2485
Length=2485
Score = 3349 bits (1813), Expect = 0.0
Identities = 2138/2291 (93%), Gaps = 37/2291 (2%)
Strand=Plus/Plus
Query 34 CAGATGAAGAAGGTTAAGCAGATTCGCGTCTCAAAGCCTTTCGATCTTCTCTCCGAAGAG 93
||||||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||
Sbjct 90 CAGATGAAGAAGGTTAAACAGATTCGTGTCTTAAAGCCTTTCGATCTTCTCTCGGAAGAG 149
Query 94 CTCGTCTTCATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 153
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 150 CTCGTCTTTATCATCCTTGACCTCATCTCTCCCAACCCTTCCGATCTCAAATCCTTCTCT 209
Query 154 CTTACTTGCAAATGGTTT-TACCAACTCGAGTCCAAGCACCGCCGATCCTTAAAACCTCT 212
||||||||||||| ||| ||||| |||||||||||||||||| ||||||||||||||||
Sbjct 210 CTTACTTGCAAAT-CTTTCTACCAGCTCGAGTCCAAGCACCGCGGATCCTTAAAACCTCT 268
Query 213 CCGCTCCGACTACCTCCCTCGCATCTTGACCCGTTTCCGCAACACCACCGATCTCGATCT 272
|||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 269 CCGCTCCGACTATCTCCCTCGCATCTTGACTCGTTACCGGAACACCACCGATCTCGATCT 328
Query 273 TACCTTCTGCCCTCGCGTCACTGACTACGCCCTCAGCGTCGTTGGCTGTCTCTGCGGTCC 332
|||||||||||| || |||||||||||||| || ||||||||||||||||||| ||| ||
Sbjct 329 TACCTTCTGCCCGCGTGTCACTGACTACGCGCTTAGCGTCGTTGGCTGTCTCTCCGGACC 388
Query 333 TACGCTCCACTCCCTCGACCTTTCTCGCTCTGCCTCCTTCTCCGCCGCGGGGCTCCTGAG 392
|||||| | |||||||||||| || ||||||| |||||||||||||||||| || ||| |
Sbjct 389 TACGCTTCGCTCCCTCGACCTCTCGCGCTCTGGCTCCTTCTCCGCCGCGGGACTACTGCG 448
Query 393 ACTGGCCGTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCGAATGCGACGGAGATGAG 452
| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 449 ATTGGCCCTCAAATGTGTCAATTTAGTCGAGATTGACCTGTCCAATGCGACGGAGATGAG 508
Query 453 AGACGCCGATGCGGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGGAG 512
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 509 AGACGCCGATGCTGCGGTGGTGGCGGAGGCGAGGAGTCTGGAGAGGCTGAAGCTGGGCAG 568
Query 513 ATGCAAGATGCTCACGGACATGGGAATCGGATGCATCGCAGTTGGATGCAAGAAGCTCAA 572
|||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 569 ATGCAAGATGCTGACGGACATGGGAATCGGATGTATAGCAGTTGGATGTAAGAAGCTCAA 628
Query 573 CATGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGCGTCGGCTTGCTTGCCGT 632
| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 629 TACGGTTAGCTTGAAATGGTGTGTTGGCGTCGGAGATTTAGGGGTTGGCTTGCTTGCCGT 688
Query 633 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATTACAGGCAAGTGTTT 692
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 689 CAAATGCAAGGACATTCGCACCTTAGACCTCTCCTACTTGCCGATCACAGGAAAGTGTTT 748
Query 693 ACATGACATTTTGAAACTCCAACACCTTGAAGAACTTTTTCTAGAAGGGTGCTTCGGAGT 752
|||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||
Sbjct 749 ACATGACATTCTGAAACTTCAACACCTTGAAGAACTTCTTCTAGAAGGGTGCTTTGGAGT 808
Query 753 AGATGATGACAGTCTTAAATCTCTCAGACATGATTGCAAGACATTGAAGAAGCTCGATGC 812
||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||
Sbjct 809 AGATGATGACAGTCTTAAATCACTCAGACATGATTGCAAGTCATTGAAGAAGCTTGATGC 868
Query 813 ATCCAGCTGCCAGAATTTAACTCATAAAGGTTTAACCTCACTTTTAAGCGGAGC-GGCAT 871
|||||||||||||||||||||||||| |||||||||||||||||||||||| || || ||
Sbjct 869 ATCCAGCTGCCAGAATTTAACTCATAGAGGTTTAACCTCACTTTTAAGCGGGGCAGG-AT 927
Query 872 GTCTCCAGCGACTGGATCTAGCACATTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 931
||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 928 ATCTTCAGCGACTTGATCTATCACACTGTTCTTCTGTGATATCATTGGATTTTGCGAGTA 987
Query 932 GCTTAAAGAAGGTTTCAGCGTTACAGTCAATCGGGTTGGATGGTTGTTCTGTTACACCTG 991
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||
Sbjct 988 GCTTAAAGAAGGTTTCAGCATTACAGTCGATCAGGTTGGATGGTTGTTCTGTTACGCCTG 1047
Query 992 ACGGTTTAAAGGCGATAGGCACATTGTGCAATTCCCTGAATGAGGTTAGTCTAAGCAAGT 1051
| ||||| |||||||||||||||||||||||||||||||| |||||||| |||||||| |
Sbjct 1048 ATGGTTTGAAGGCGATAGGCACATTGTGCAATTCCCTGAAAGAGGTTAGCCTAAGCAAAT 1107
Query 1052 GTGTGAGCGTATCTGATGAAGGTCTCTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1111
| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1108 GCGTGAGCGTAACTGATGAAGGTCTTTCTTCTCTAGTAATGAAACTGAAAGACCTCAGAA 1167
Query 1112 AACTTGACATCACATGTTGTCGGAAACTAAGTGGAGTTTCAATCACCCAAATCGCCAATT 1171
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1168 AACTTGACATCACATGTTGCCGGAAACTAAGTAGAGTTTCAATCACCCAAATCGCCAATT 1227
Query 1172 CATGTCCCTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1231
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 CGTGTCCTTTACTAGTCTCTTTGAAGATGGAGTCTTGTTCTCTTGTTTCCAGAGAAGCCT 1287
Query 1232 TTTGGTTGATCGGACAGAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1291
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TTTGGTTGATCGGACAAAAGTGTCGGCTACTTGAAGAGCTTGACTTAACTGACAACGAGA 1347
Query 1292 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTTAGTCTTTCCTCGTTAAAGTTGG 1351
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1348 TTGATGATGAAGGACTGAAATCCATATCTAGTTGTCTGAGTCTTTCCTCGTTAAAGCTGG 1407
Query 1352 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATTGGGATGGGCTGCTCAAATC 1411
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1408 GAATTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATCGGGATGGGCTGTTCAAATC 1467
Query 1412 TCCGTGAACTTGATCTCTATAGGTCAGTAGGAATAACAGACGTAGGCATCTCCACAATCG 1471
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1468 TCCGTGAACTTGATCTCTATAGGTCAGTGGGAATAACAGACGTAGGCATCTCCACAATTG 1527
Query 1472 CCCAAGGCTGCATTCATCTGGAAACAATAAACATATCATACTGCCAAGACATAACAGACA 1531
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1528 CCCAAGGCTGCATTCATCTGGAAACAATAAACATTTCATACTGCCAAGACATAACAGACA 1587
Query 1532 AGTCCCTGGTTTCATTGTCAAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1591
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1588 AGTCCCTGGTTTCATTGTCCAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTC 1647
Query 1592 CTAACATCACGTCACAAGGACTTGCGGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1651
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1648 CTAACATCACGTCCCAAGGACTTGCAGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGG 1707
Query 1652 TCGACTTGAAGAAGTGTCCATCCATCAATGATTCTGGGTTGCTCGCTCTCGCCCACTTCT 1711
| |||||||||||||| ||||||||||||||| | |||||||||||||| || |||||||
Sbjct 1708 TTGACTTGAAGAAGTGCCCATCCATCAATGATGCGGGGTTGCTCGCTCTGGCTCACTTCT 1767
Query 1712 CACAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1771
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 CTCAGAATCTCAAACAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCT 1827
Query 1772 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGATTTCAAGTGGTTTAAGCC 1831
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 1828 CCCTAGCCAACATAGGGTGTTTACAGAACATAGCGGTTGTGAACTCGAGTGGTTTAAGAC 1887
Query 1832 CAAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGACTAAGGAAAGCGAAACTACATG 1891
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1888 CGAGCGGAGTAGCAGCAGCATTGCTGGGGTGTGGAGGATTAAGGAAAGCGAAACTACATG 1947
Query 1892 CCTCCCTAAGATCGCTCCTTCCTCTATCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 1951
| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1948 CGTCCCTAAGATCACTGCTTCCTCTTTCTCTAATCCACCACTTGGAAGCTCGTGGTTGTG 2007
Query 1952 CTTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2011
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 CGTTCCTCTGGAAAGACAATACCCTTCAGGCGGAGTTAGATCCCAAGTACTGGAAGCAAC 2067
Query 2012 AGCTGGAAGAGATAGTGCCTTGAA--A---GTGTGAA-A--CATTCTGAA-TGGGAAAGA 2062
||||||||||||| | ||||| || | ||| ||| | ||||||||| |||||||||
Sbjct 2068 AGCTGGAAGAGATGGCGCCTTAAATTAAAAGTGAGAAGAAACATTCTGAAATGGGAAAGA 2127
Query 2063 GG-GTTTCTATCGGAGGCAGAAGACAGGCCA-GTTTTGGGGGCCCAGTGTGGATTAGCTG 2120
|| ||| |||| |||| ||| ||||||||| |||||||| ||||||||||||||||||
Sbjct 2128 GGAGTTCCTATGGGAGCCAGCAGACAGGCCCTGTTTTGGG--CCCAGTGTGGATTAGCTG 2185
Query 2121 GAACATTTTTGGTCTCTTTTGTGTTATTGTTGACGGCGCGTGTACTAACCAACCCCACAC 2180
||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||
Sbjct 2186 GAACAATTTTGGTCTCTTTTGTGTTGTTGTTGACGGCGCGTGTTCTAAC-AACCCCACAC 2244
Query 2181 AACCTTATATTATAAGTCTAGTCACATGGTGGTGATATGA-ATGGTACCGTTGTATATGT 2239
||||||| |||||||||||||||||||||||| | | || |||||||||||||||||||
Sbjct 2245 AACCTTACATTATAAGTCTAGTCACATGGTGG-G-T--GACATGGTACCGTTGTATATGT 2300
Query 2240 AAT--------Cttttttttttt-----GGTTGGGT-GCCGATATTAACGGACGTAACAG 2285
| | |||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 2301 AGTTTTTGTTTCTTTTTTTTTTTTTTTTGGTTGGGGAGCCGAAATTAACGGACGTAACAG 2360
Query 2286 AGTCACAAGGG 2296
|||||||||||
Sbjct 2361 AGTCACAAGGG 2371
> AT5G01715.1 | Symbols: | pseudogene, antisense mRNA to gene
At5g01720, blastp match of 29% identity and 3.2e-13 P-value
to GP|12848653|dbj|BAB28039.1||AK012109 unnamed protein product
{Mus musculus} | chr5:267185-269354 FORWARD LENGTH=2170
Length=2170
Score = 641 bits (347), Expect = 0.0
Identities = 381/398 (96%), Gaps = 0/398 (0%)
Strand=Plus/Minus
Query 907 GTGATATCATTGGATTTTGCGAGTAGCTTAAAGAAGGTTTCAGCGTTACAGTCAATCGGG 966
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||
Sbjct 1459 GTGATATCATTGGATTTTGCGAGTAGCTTAAAGAAGGTTTCAGCATTACAGTCGATCAGG 1400
Query 967 TTGGATGGTTGTTCTGTTACACCTGACGGTTTAAAGGCGATAGGCACATTGTGCAATTCC 1026
|||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||
Sbjct 1399 TTGGATGGTTGTTCTGTTACGCCTGATGGTTTGAAGGCGATAGGCACATTGTGCAATTCC 1340
Query 1027 CTGAATGAGGTTAGTCTAAGCAAGTGTGTGAGCGTATCTGATGAAGGTCTCTCTTCTCTA 1086
||||| |||||||| |||||||| || ||||||||| ||||||||||||| |||||||||
Sbjct 1339 CTGAAAGAGGTTAGCCTAAGCAAATGCGTGAGCGTAACTGATGAAGGTCTTTCTTCTCTA 1280
Query 1087 GTAATGAAACTGAAAGACCTCAGAAAACTTGACATCACATGTTGTCGGAAACTAAGTGGA 1146
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1279 GTAATGAAACTGAAAGACCTCAGAAAACTTGACATCACATGTTGCCGGAAACTAAGTAGA 1220
Query 1147 GTTTCAATCACCCAAATCGCCAATTCATGTCCCTTACTAGTCTCTTTGAAGATGGAGTCT 1206
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1219 GTTTCAATCACCCAAATCGCCAATTCGTGTCCTTTACTAGTCTCTTTGAAGATGGAGTCT 1160
Query 1207 TGTTCTCTTGTTTCCAGAGAAGCCTTTTGGTTGATCGGACAGAAGTGTCGGCTACTTGAA 1266
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1159 TGTTCTCTTGTTTCCAGAGAAGCCTTTTGGTTGATCGGACAAAAGTGTCGGCTACTTGAA 1100
Query 1267 GAGCTTGACTTAACTGACAACGAGATTGATGATGAAGG 1304
||||||||||||||||||||||||||||||||||||||
Sbjct 1099 GAGCTTGACTTAACTGACAACGAGATTGATGATGAAGG 1062
Score = 479 bits (259), Expect = 6e-134
Identities = 296/314 (94%), Gaps = 1/314 (0%)
Strand=Plus/Minus
Query 1420 CTTGATCT-CTATAGGTCAGTAGGAATAACAGACGTAGGCATCTCCACAATCGCCCAAGG 1478
||| |||| || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 782 CTTTATCTACTCCAGGTCAGTGGGAATAACAGACGTAGGCATCTCCACAATTGCCCAAGG 723
Query 1479 CTGCATTCATCTGGAAACAATAAACATATCATACTGCCAAGACATAACAGACAAGTCCCT 1538
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 722 CTGCATTCATCTGGAAACAATAAACATTTCATACTGCCAAGACATAACAGACAAGTCCCT 663
Query 1539 GGTTTCATTGTCAAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTCCTAACAT 1598
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 GGTTTCATTGTCCAAATGCTCGTTGTTACAAACATTCGAGAGCAGGGGATGTCCTAACAT 603
Query 1599 CACGTCACAAGGACTTGCGGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGGTCGACTT 1658
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 602 CACGTCCCAAGGACTTGCAGCCATTGCTGTTCGGTGCAAGCGACTCGCCAAGGTTGACTT 543
Query 1659 GAAGAAGTGTCCATCCATCAATGATTCTGGGTTGCTCGCTCTCGCCCACTTCTCACAGAA 1718
||||||||| ||||||||||||||| | |||||||||||||| || |||||||| |||||
Sbjct 542 GAAGAAGTGCCCATCCATCAATGATGCGGGGTTGCTCGCTCTGGCTCACTTCTCTCAGAA 483
Query 1719 TCTCAAACAGATAA 1732
|||||||||| |||
Sbjct 482 TCTCAAACAGGTAA 469
Score = 412 bits (223), Expect = 6e-114
Identities = 245/256 (96%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1726 CAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCTCCCTAGCCAACATA 1785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 CAGATAAACGTGTCAGACACAGCTGTGACTGAAGTGGGACTTCTCTCCCTAGCCAACATA 326
Query 1786 GGGTGTTTACAGAACATAGCGGTTGTGATTTCAAGTGGTTTAAGCCCAAGCGGAGTAGCA 1845
|||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||
Sbjct 325 GGGTGTTTACAGAACATAGCGGTTGTGAACTCGAGTGGTTTAAGACCGAGCGGAGTAGCA 266
Query 1846 GCAGCATTGCTGGGGTGTGGAGGACTAAGGAAAGCGAAACTACATGCCTCCCTAAGATCG 1905
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 265 GCAGCATTGCTGGGGTGTGGAGGATTAAGGAAAGCGAAACTACATGCGTCCCTAAGATCA 206
Query 1906 CTCCTTCCTCTATCTCTAATCCACCACTTGGAAGCTCGTGGTTGTGCTTTCCTCTGGAAA 1965
|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 205 CTGCTTCCTCTTTCTCTAATCCACCACTTGGAAGCTCGTGGTTGTGCGTTCCTCTGGAAA 146
Query 1966 GACAATACCCTTCAGG 1981
||||||||||||||||
Sbjct 145 GACAATACCCTTCAGG 130
Score = 233 bits (126), Expect = 5e-60
Identities = 136/141 (96%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 1295 ATGATGAAGGACTGAAATCCATATCTAGTTGTCTTAGTCTTTCCTCGTTAAAGTTGGGAA 1354
|||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 986 ATGATGCAGGACTGAAATCCATATCTAGTTGTCTGAGTCTTTCCTCGTTAAAGCTGGGAA 927
Query 1355 TTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATTGGGATGGGCTGCTCAAATCTCC 1414
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 926 TTTGTCTTAACATAACAGACAAAGGGCTCTCGTACATCGGGATGGGCTGTTCAAATCTCC 867
Query 1415 GTGAACTTGATCTCTATAGGT 1435
|||||||||||||||||||||
Sbjct 866 GTGAACTTGATCTCTATAGGT 846
Score = 147 bits (79), Expect = 6e-34
Identities = 100/110 (91%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 800 AGAAGCTCGATGCATCCAGCTGCCAGAATTTAACTCATAAAGGTTTAACCTCACTTTTAA 859
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1817 AGAAGCTTGATGCATCCAGCTGCCAGAATTTAACTCATAGAGGTTTAACCTCACTTTTAA 1758
Query 860 GCGGAGC-GGCATGTCTCCAGCGACTGGATCTAGCACATTGTTCTTCTGT 908
|||| || || || ||| |||||||| |||||| |||| |||||||||||
Sbjct 1757 GCGGGGCAGG-ATATCTTCAGCGACTTGATCTATCACACTGTTCTTCTGT 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 113955237150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5