BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486904
Length=1019
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01670.2 | Symbols: | NAD(P)-linked oxidoreductase superfam... 1171 0.0
> AT5G01670.2 | Symbols: | NAD(P)-linked oxidoreductase superfamily
protein | chr5:251978-253960 FORWARD LENGTH=1176
Length=1176
Score = 1171 bits (634), Expect = 0.0
Identities = 691/719 (96%), Gaps = 1/719 (0%)
Strand=Plus/Plus
Query 270 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 GGTGCACTGAGTTATCTCCTGAGAGAGTGCGTCCTGCTCTGCAAAACACCCTTAAAGAGC 431
Query 330 TTCAATTAGAGTACCTTGATCTATACTTGATTCACTGGCCTTTCCGGCTAAGAGAAGGAG 389
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 432 TTCAATTAGAGTACCTTGATCTCTACTTGATTCACTGGCCTATCCGGCTAAGAGAAGGAG 491
Query 390 CCAGTAAGCCACCAAAGGCAGGAGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 449
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 492 CCAGTAAGCCACCAAAGGCAGGGGACGTTCTTGACTTTGACATGGAAGGAGTTTGGAGAG 551
Query 450 AAATGGAGAATCTTGCCAAGGACAATCTTGTCAGGAATATCGGTGTCTGTAACTTTACAG 509
|||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 552 AAATGGAGAATCTTTCCAAGGACAGTCTCGTCAGGAATATCGGTGTCTGTAACTTTACAG 611
Query 510 TCACTAAGCTCAATAAGCTGCTAGAATTTGCTGAATTGATCCCTTCCGTTTGCCAGATGG 569
|||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||
Sbjct 612 TCACTAAGCTCAATAAGCTGCTAGGATTTGCTGAACTGATCCCTGCCGTTTGCCAGATGG 671
Query 570 AAATGCATCCTGGTTGGAGAAACGATACCATGCTCGAATTCTGCAAGAAGAATGAGATCC 629
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 672 AAATGCATCCTGGTTGGAGAAACGATAGGATACTCGAATTCTGCAAGAAGAATGAGATCC 731
Query 630 ATGTTACTGCCTATTCGCCGTTGGGATCTCAAGAAGGTGGGAGAGATCTGATACATGATC 689
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 732 ATGTTACTGCCTATTCTCCATTGGGATCTCAAGAAGGCGGGAGAGATCTGATACACGATC 791
Query 690 AGACGGTGGATAGAATAGCAAAGAAGCTGAATAAGACACCGGGACAGGTTCTAGTGAAAT 749
||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 792 AGACGGTGGATAGGATAGCGAAGAAGCTGAATAAGACACCGGGACAGATTCTAGTGAAAT 851
Query 750 GGGGTTTACAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 809
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 GGGGTTTGCAGAGAGGAACAAGTGTCATCCCTAAGTCATTGAATCCAGAGAGGATCAAAG 911
Query 810 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAAAAAGACTTCCAAGCTCTCAACAGCA 869
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 912 AGAACATCAAAGTGTTTGATTGGGTGATCCCTGAACAAGACTTCCAAGCTCTCAACAGCA 971
Query 870 TTACTGACCAGAAACGAGTGATGGACGGTGAGGATATCTTCGTCAACAAGACCGAAGGTC 929
| |||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||
Sbjct 972 TCACTGACCAGAAACGAGTGATAGACGGTGAGGATCTTTTCGTCAACAAGACCGAAGGTC 1031
Query 930 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGATTAATC-GAACCCGAGAATCAA 987
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 1032 CATTCCGTAGTGTGGCTGATCTATGGGACCATGAAGACTAAACCGAACCCGAGAATCAA 1090
Score = 455 bits (246), Expect = 4e-127
Identities = 266/276 (96%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 1 AATGGCACATGCCACCTTTACGTCGGAAGGTCAGAATATGGAGTCGTTTCGGCTCTTGAG 60
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 22 AATGGCACATGCCACGTTTACGTCGGAAGGGCAGAATATGGAGTCGTTTCGACTCTTGAG 81
Query 61 CGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAGGCCACCCA 120
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 82 TGGCCACAAAATCCCAGCCGTTGGACTCGGCACGTGGCGATCTGGGTCTCAAGCCGCCCA 141
Query 121 CGCCGTTGTCACTGCACTCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 180
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 CGCCGTTGTCACTGCAATCGTCGAGGGTGGCTATAGGCACATAGATACAGCTTGGGAGTA 201
Query 181 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACACTGGCCTTGAAAG 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 202 TGGTGATCAGAGAGAGGTCGGTCAAGGAATAAAGAGGGCGATGCACGCTGGCCTTGAAAG 261
Query 241 GAGGGACCTCTTTGTGACCTCGAAGCTGTGGTGCAC 276
||||||||||||||||||||||||||| |||| |||
Sbjct 262 GAGGGACCTCTTTGTGACCTCGAAGCTTTGGTACAC 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49932742118
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5