BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486912
Length=1555
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01620.3 | Symbols: TBL35 | TRICHOME BIREFRINGENCE-LIKE 35 |... 2158 0.0
> AT5G01620.3 | Symbols: TBL35 | TRICHOME BIREFRINGENCE-LIKE 35
| chr5:232732-234847 FORWARD LENGTH=1550
Length=1550
Score = 2158 bits (1168), Expect = 0.0
Identities = 1379/1474 (94%), Gaps = 41/1474 (3%)
Strand=Plus/Plus
Query 91 TGAAGAAGAAGAGAAGAGTTCTTCTTCCTCTTACTCTGGTGCTTGGTGACATTTTCTCTT 150
|||||||||||||| ||| ||||||||||| || ||| ||||||||||||||||
Sbjct 81 TGAAGAAGAAGAGACGAG---GTCTTCCTCTTA--CT-GTG-GTGGTGACATTTTCTCTA 133
Query 151 GAAA-CAAGTCTCCG--ATGTCGCAGAGATGGAGCAGAAAAAAGAGTCGGCTTCCATTAG 207
||| ||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||
Sbjct 134 AAAAGAAAGTCTCCGATATGTCGCAGAGATGGAGTAGAAAGAAGAGTAGACTTCCATTAG 193
Query 208 CGGGTCTCCTCTTTATGCTCGTTGTCACCTTTATGATTCTCTTCAACGAGCGTAGCATTC 267
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 194 CGGGTCTCCTCTTTATTCTCGTTGTCACCTTTATGATTCTCTTCAACGAGCGTAGCATTC 253
Query 268 AGCAGATCCACCACCACGCGGCCAGTCACGGTCAAAATCTCCGAGAAGCTTCGACGTTCA 327
|||||||||| |||||||| || |||||| |||||||||||||||| |||| ||||||
Sbjct 254 AGCAGATCCATCACCACGCCGCGAGTCACACTCAAAATCTCCGAGAACCTTCCACGTTCG 313
Query 328 ATCTCGTCAAGCCTAATGTTCCT-GGCAATT-ACTACTT-GG-G---A--G---C---TC 372
|| |||||||||||||||||||| || ||| ||||||| || | | | | |
Sbjct 314 ATTTCGTCAAGCCTAATGTTCCTCGG--ATTAACTACTTGGGAGCTCATGGATTCTGTTT 371
Query 373 T--------T---GAGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAG 421
| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGAAAAAAATGCAGAGGTTTTGGATAGATTCAGCAAATGCAACTCGACGAAAGAGTACAG 431
Query 422 TGGGAAGAAAATCGGATGGGTTGGCCCGTTTGAAG---ACCCGGGTCAAATAGCAAAGGA 478
||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||
Sbjct 432 TGGGAAGAAAATCGGATGGGTTGACCCGTTTGAAGACCACCCGGGTCAAGTAACAAAGGA 491
Query 479 TGACCAGAAATGTGATGTCTTCTCTGGGAAATGGGTCTTTGATAATTCTTCATCATACCC 538
|| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 492 GGAGCAGAAATGTGATGTCTTTTCTGGGAAATGGGTCTTTGATAATTCATCATCATACCC 551
Query 539 TTTACACAAGGAATCTCAGTGCCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGG 598
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 552 TTTACACAAGGAATCTCAGTGTCCTTACATGTCCGACCAGTTGGCTTGTCAGAAGCATGG 611
Query 599 TAGGAAGGATTTGGAGTATCAGCATTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TAGGAAGGATTTGGAGTATCAGCATTGGAGATGGCAACCTCATGCCTGCAACTTGAAGAG 671
Query 659 ATGGAATGTGACAGAAATGTGGGAGAAGCTGAGAGGAAAGAGATTGATGTTTGTTGGAGA 718
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 672 ATGGAATGCGATAGAAATGTGGGAGAAGCTGAGAGGAAAGAGATTGATGTTTGTTGGAGA 731
Query 719 CTCATTAAACAGAGGCCAATGGATTTCAATGGTTTGTCTCTTACAGTCTGTCATTCCACG 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 CTCGTTAAACAGAGGCCAATGGATTTCAATGGTTTGTCTCTTACAGTCTGTCATTCCACG 791
Query 779 TGAGAAGCAATCTATGTCTCCTAACGCTCACCTCACCATTTTCAGGGCTGAGGACTACAA 838
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 TGACAAGCAGTCTATGTCTCCTAACGCTCACCTCACCATTTTCAGGGCTGAGGACTACAA 851
Query 839 TGCCACAGTGGAGTTTCTCTGGGCACCGTTGCTCGTGGAATCGAATTCTGATGACCCTGT 898
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 852 TGCCACAGTGGAGTTTCTCTGGGCACCGTTGCTCGTGGAGTCGAATTCTGATGACCCTGT 911
Query 899 TAATCACAGATTGGGCGAACGCATTATCCGACCCGATTCTGTTCTTAAACATGCATCAAA 958
||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 912 TAATCACAGATTGAGCGAGCGGATTATCCGACCCGATTCTGTTCTTAAACATGCATCAAA 971
Query 959 GTGGCAACATGCTGATATTCTAATCTTCAACACCTACTTATGGTGGAGACAAGACTCTGT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GTGGCAACATGCTGATATTCTAATCTTCAACACCTACTTATGGTGGAGACAAGACTCTGT 1031
Query 1019 CAAGCTCCGATGGAGCAGTGAAGAAAGAGGGTCATGCGAGGAGGTGAAGGGCGCCGAGGG 1078
|||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 1032 CAAGCTCCGATGGAGCAGTGAAGAAAAAGGGTCATGCGAGGAGGTGAAGAGCGCCGAGGG 1091
Query 1079 AATGGAGATGGCAATGAATACTTGGGGTGATTGGATTGCTAACAATGTCGATCCAAACAC 1138
|||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 1092 AATGGAGATGGCAATGGATAGTTGGGGTGATTGGGTTGCTAACAATGTCGATCCAAACAA 1151
Query 1139 AAAGCGAATTTTCTTCGTTACAATGTCTCCTACGCATCAATGGAGCCGAGAATGGAACCC 1198
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1152 AAAGCGAGTTTTCTTCGTTACAATGTCTCCTACACATCAATGGAGCCGAGAATGGAACCC 1211
Query 1199 GGGAAGCGAAGGAAACTGCTACGGGGAGAAGAAACCGATAGAGGAAGAGAGTTATTGGGG 1258
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1212 GGGAAGCGAAGGAAACTGCTACGGGGAGAAGAAACCAATAGAGGAAGAGAGTTATTGGGG 1271
Query 1259 AAGTGGGTCGGACATTCCGACAATGAGGATGGTGAAGAGAGTTTTGGATAGATTGGGACC 1318
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1272 AAGTGGGTCGGACATTCCGACAATGAGGATGGTGAAGAGAGTTTTGGAGAGATTGGGACC 1331
Query 1319 AAAGGTTTCAGTTATAAACATCACTCAGTTGTCTGAGTATCGAAAAGATGGTCATCCATC 1378
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332 AAAGGTCTCAGTTATAAACATCACTCAGTTGTCTGAGTATCGAAAAGATGGTCATCCATC 1391
Query 1379 AGTGTACCGGAAATTTTGGGAACCTCTAAACGAAGACCGGTTGAAAAACCCGGCATCGTA 1438
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1392 GGTGTACCGGAAATTCTGGGAACCTCTAAATGAAGACCGGTTGAAAAACCCGGCATCGTA 1451
Query 1439 TTCTGACTGTACTCATTGGTGTGTACCTGGAGTTCCTGATGTCTGGAATCAATTGCTTTT 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1452 TTCTGACTGTACTCATTGGTGTGTACCTGGAGTTCCTGATGTCTGGAATCAATTGCTTTT 1511
Query 1499 CCAGTTTTTGTGAAAATGAAATGAATAAAACCTT 1532
||| ||||||||||||||||||||||| ||||||
Sbjct 1512 CCATTTTTTGTGAAAATGAAATGAATATAACCTT 1545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76756633305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5