BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486913

Length=582
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01610.1 | Symbols:  | Protein of unknown function, DUF538 |...   852    0.0  


> AT5G01610.1 | Symbols:  | Protein of unknown function, DUF538 
| chr5:230987-232205 FORWARD LENGTH=812
Length=812

 Score =  852 bits (461),  Expect = 0.0
 Identities = 504/524 (96%), Gaps = 6/524 (1%)
 Strand=Plus/Plus

Query  1    GAGAGAGA-ATGGATCAGATCTTCAACAAGGTTGGATCCTACTGGTTAGGTCAGAAGGCT  59
            |||||| | ||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  81   GAGAGA-ATATGGATCAGATCTTCAACAAGGTTGGATCCTACTGGTTAGGCCAAAAGGCT  139

Query  60   AACAAGCAGTTTGACTCCGTCGGCAACGATCTCAACTCCGTGTCAACGAGCATTGAAGGA  119
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  140  AACAAGCAGTTTGACTCCGTCGGCAACGATCTCAACTCGGTGTCAACGAGCATTGAAGGA  199

Query  120  GGAACAAAATGGTTGGTCAACAAGATCAAAGGGAAAATGCAGAAGCCGTTGCCTGAGTTA  179
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  200  GGAACAAAATGGTTGGTCAACAAAATCAAAGGGAAAATGCAGAAGCCGTTGCCTGAGTTA  259

Query  180  CTAAAAGAGTATGATTTGCCTG-TGGGAATCTTCCCAGGG-GATGCTACAAACTATGAGT  237
            |||||||| ||||||||||| | | ||||||||||| ||| |||||||||||||| ||||
Sbjct  260  CTAAAAGAATATGATTTGCC-GATTGGAATCTTCCC-GGGAGATGCTACAAACTACGAGT  317

Query  238  TCGATGAAGAGACAAAGAAACTAACCGTTTTGATTCCATCGATATGCGAAGTTGGATACA  297
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  318  TCGATGAAGAGACAAAGAAACTAACCGTTTTGATCCCATCGATATGCGAAGTTGGATACA  377

Query  298  AGGACTCATCAGTCTTGAAATTCACAACAACAGTAACAGGACATCTTGAGAAAGGAAAGC  357
            |||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  378  AGGATTCATCAGTGTTGAAGTTCACAACAACAGTAACAGGACATCTTGAGAAAGGAAAGC  437

Query  358  TAACAGATGTGGAAGGAATCAAGACAAAAGTAATGATATGGGTAAAAGTGACAAGCATAT  417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  438  TAACAGATGTGGAAGGAATCAAGACAAAAGTAATGATATGGGTAAAAGTGACAAGCATAT  497

Query  418  CTGCAGATGCATCAAAGGTCTACTTCACTGCAGGAATGAAGAAGAGCAGAAGCAGAGATG  477
            || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  498  CTACAGATGCATCAAAGGTCTATTTCACTGCAGGAATGAAGAAGAGCAGAAGCAGAGATG  557

Query  478  CTTATGAGGTTCAAAGAAATGGCCTCCGAGTCGATAAATTCTAA  521
            |||||||||||||||||||||| |||||||||||||||||||||
Sbjct  558  CTTATGAGGTTCAAAGAAATGGTCTCCGAGTCGATAAATTCTAA  601



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27980419879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5