BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg486918

Length=432
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G01570.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   438    2e-122


> AT5G01570.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G08880.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:221367-222836 FORWARD LENGTH=644
Length=644

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 274/292 (94%), Gaps = 2/292 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAGATCAGTTGAGGAATTTCGAAATGGCGATATCATGGGGAGACGAATTGATCCAT  60
            ||| ||||||||| |||||||||||||||||  || ||||||||||| ||||||||||||
Sbjct  1    ATGAGAGATCAGTCGAGGAATTTCGAAATGGTAATTTCATGGGGAGATGAATTGATCCAT  60

Query  61   GTTTTGGATGATAGGAAAGGATTTGGTGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT  120
            |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct  61   GTTTTGGATGATAGGAAAGGATTTGACGTGTTGGTACAAACTCTCGAGCAACTGAGAGCT  120

Query  121  A-TCCAATTCTCCTGCGACGACGATTTTAGCGAGATACATGAATCTCTCCAAGATTTGCA  179
            | ||| ||||||||||||||| |||||||  |||||||||||||||||||||||||||||
Sbjct  121  ATTCC-ATTCTCCTGCGACGAAGATTTTAAAGAGATACATGAATCTCTCCAAGATTTGCA  179

Query  180  GAAGAAACTCGATGTTTGCAAGGAGAAGACTGATGAGGCAAATTCAGAGATTGCTGATGA  239
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct  180  GAAGAAACTCGATGTTTGCAAGGAGAAGACAGATGAGGCAAATTCAGAGATTGCGGATGA  239

Query  240  AGAAGAAACTGAGCGTCTTCATAAAGAGCTTGATGAAGAGCTAGAACTGGAG  291
            |||||||| |||||||||||| |||||||||||||||||||||||||| |||
Sbjct  240  AGAAGAAATTGAGCGTCTTCAGAAAGAGCTTGATGAAGAGCTAGAACTAGAG  291


 Score =  150 bits (81),  Expect = 9e-36
 Identities = 97/105 (92%), Gaps = 0/105 (0%)
 Strand=Plus/Plus

Query  291  GAATAAGCAGGAACAGTTGAGAACCGAGAAAAAGCTTTCTATGTATGTTTCTGTCACTAG  350
            ||| |||| ||| |||||||||||||||| ||||||| ||||||||| |||||||||| |
Sbjct  357  GAACAAGCGGGACCAGTTGAGAACCGAGACAAAGCTTCCTATGTATGCTTCTGTCACTCG  416

Query  351  AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTGTAT  395
            ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  417  AGTTATACCAAACATTGATGATTCATTGAAGACCTCAGGCTATAT  461



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20509241592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5