BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486922
Length=1094
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photo... 1434 0.0
> AT5G01530.1 | Symbols: LHCB4.1 | light harvesting complex photosystem
II | chr5:208937-210445 FORWARD LENGTH=1222
Length=1222
Score = 1434 bits (776), Expect = 0.0
Identities = 1026/1137 (90%), Gaps = 56/1137 (5%)
Strand=Plus/Plus
Query 1 TGGATTTGTGTATCAATCCAACGGTCGTAATCGTCTTTCCAAGATA-GCTCAGCTCCAAA 59
|||||||||| ||| ||||||||||| ||||||||||||||||||| || |||||||
Sbjct 1 TGGATTTGTGAATCGATCCAACGGTCATAATCGTCTTTCCAAGATAGGC-CAGCTCC--- 56
Query 60 TGaaaaaaaaaTCCCCTCCACGCATCTATAATCGTGGATCAAGAAAC---T-GTGCAT-T 114
| ||| || |||||||||||||||||||||| |||||||||| | | | | |
Sbjct 57 -G-----AAACTCACCTCCACGCATCTATAATCGTGTATCAAGAAACGGATCTTTCTTCT 110
Query 115 CT-TC-TC----TAT---------C--TT-GCCGGAGATGGCCGCCACTTCCGCCGCTGC 156
|| || || ||| | || ||||||||||||||| || |||||||||||
Sbjct 111 CTATCTTCTGAATATCACAAAACCCAATTAGCCGGAGATGGCCGCAACATCCGCCGCTGC 170
Query 157 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTTGCTCCCGGTATCCATCCCGGTTCAAG 216
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 171 TGCAGCTGCTTCTTCCATCATGGGTACTCGGGTGGCTCCCGGTATCCATCCCGGTTCAGG 230
Query 217 TCGGTTCACGGCCCTGTTCAGTTTGGGAAAGAAGAAGGCAGCTCCCAAAAAGAGTGCGTC 276
||||||||| ||| ||||| |||| |||||||||||||||||||||||||||||| | |
Sbjct 231 TCGGTTCACAGCCGTGTTCGGTTTCGGAAAGAAGAAGGCAGCTCCCAAAAAGAGT--G-C 287
Query 277 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGAATG 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 288 CAAAAAGACGGTGACTACGGACCGGCCTCTTTGGTACCCAGGCGCCATTTCTCCTGACTG 347
Query 337 GCTCGATGGTTCGTTGGTTGGAGATTACGGTTTTGATCCCTTTGGTTTGGGTAAACCGGC 396
||| |||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 348 GCTTGATGGTTCCTTGGTTGGAGATTACGGTTTTGATCCCTTCGGTTTAGGCAAACCGGC 407
Query 397 CGAGTATCTCCAGTTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 456
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 CGAGTATCTTCAATTCGATATCGATTCACTAGACCAGAATCTGGCTAAGAACTTGGCCGG 467
Query 457 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 AGACGTGATCGGAACCCGTACGGAAGCTGCCGACGCCAAATCGACGCCGTTTCAGCCGTA 527
Query 517 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAGCTGATCCACGGACGGTGGGC 576
||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 528 CAGTGAGGTGTTCGGAATCCAGAGATTCAGGGAATGCGAACTCATCCACGGACGGTGGGC 587
Query 577 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAGTGGCTCACCGGCGTTACTTGGCAAGA 636
||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct 588 GATGCTCGCTACTCTCGGCGCTCTCTCCGTCGAATGGCTTACCGGCGTTACATGGCAAGA 647
Query 637 CGCCGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCGTTCTC 696
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 648 CGCTGGCAAGGTGGAGCTTGTAGATGGATCGTCCTACTTGGGGCAGCCATTACCTTTCTC 707
Query 697 GATCTCGACATTGATATGGATCGAGGTGTTAGTGGTCGGCTACATCGAGTTCCAGCGCAA 756
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 708 GATCTCGACATTGATATGGATCGAGGTGTTAGTGATCGGCTACATCGAGTTCCAGCGCAA 767
Query 757 TGCTGAGCTTGACTCGGAGAAGCGTTTGTACCCGGGAGGCAAGTACTTCGACCCGCTAGG 816
|| |||||||| |||||||||||||| ||||| |||||||||| ||| |||||||||||
Sbjct 768 CGCCGAGCTTGATTCGGAGAAGCGTTTATACCCCGGAGGCAAGTTCTTTGACCCGCTAGG 827
Query 817 TTTGGCGGCTGACCCGGAGAAGAAGGCTCAACTTCAATTAGCCGAGATCAAGCACGCACG 876
||| ||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||
Sbjct 828 TTTAGCGGCTGACCCGGAGAAGACTGCTCAACTTCAGTTAGCTGAGATCAAGCATGCACG 887
Query 877 TCTTGCGATGGTCGCCTTCTTGGGATTTGCGGTTCAAGCGGCTGCAACGGGTAAAGGTCC 936
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 888 TCTTGCGATGGTCGCCTTCTTGGGATTCGCGGTTCAAGCGGCTGCAACAGGTAAAGGTCC 947
Query 937 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 996
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 ACTCAACAATTGGGCTACTCACCTCAGTGATCCACTCCACACCACCATCATCGATACCTT 1007
Query 997 CTCCTC--CT------C-TTA--A-G--A--TTCTATGTGTAACTTTTGTATAAACAGAG 1040
|||||| || | ||| | | | |||||| |||||||| |||| ||||||||
Sbjct 1008 CTCCTCATCTTAAAATCATTATCATGTGAGATTCTATTTGTAACTTATGTAAAAACAGAG 1067
Query 1041 CTATGAT-A--CTGAATCGAGTTTGGGCTTTTGCTCGTTTGGTTTATCTACTTGTTT 1094
||||||| | ||||||||| |||||||||||||| ||||||||||| ||| |||||
Sbjct 1068 CTATGATGATACTGAATCGACTTTGGGCTTTTGCTTGTTTGGTTTATTTACATGTTT 1124
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53614182060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5