BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486926
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01500.1 | Symbols: TAAC | thylakoid ATP/ADP carrier | chr5:... 2292 0.0
> AT5G01500.1 | Symbols: TAAC | thylakoid ATP/ADP carrier | chr5:198943-201552
FORWARD LENGTH=1545
Length=1545
Score = 2292 bits (1241), Expect = 0.0
Identities = 1361/1419 (96%), Gaps = 7/1419 (0%)
Strand=Plus/Plus
Query 1 AATAAAAATCTCAAATTCTCAGGCGAGATTCCGGAAGCAAAACATTCCTAAATTTCGCCA 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AATAAAAATCTGAAATTCTCAGGCGAGATTCCGGAAGCAAAACATTCCTAAATTTCGCCA 63
Query 61 AGTGATCCGCCATGGGAGAAGAGAAGTCTCTGCTTCAGTTCCGTAGTATTCCTTCACTCA 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 64 AGTGATCCGCCATGGGAGAAGAGAAGTCTCTGCTTCAGTTCCGTAGTTTTCCTTCACTCA 123
Query 121 GGACCTCTGATTTTGCTCTCACCGAAGAACCTTCATGGAGGCTGGAGAACAACGTGTCGT 180
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 AGACCTCTGATTTCGCTCTCACCGAAGAACCTTCATGGAGGCTGGAGAACAACGTGTCGT 183
Query 181 CGAATCGCCGGAGAGGAAACAAAG-GAAGCGGTGGCGTTTTTACCAATTTCGCCTCTCTT 239
|||||||||||||||||||| ||| ||||||||||||||||||||||||| || || |||
Sbjct 184 CGAATCGCCGGAGAGGAAAC-AAGAGAAGCGGTGGCGTTTTTACCAATTTTGCGTCCCTT 242
Query 240 TCGGTAGCGAATAGGAGAGATCGGAGAGCATCTACGGTTAACGGTGGAAATGGCGGCGGA 299
|| ||||||| ||||||||||||||||| |||||| |||||||| | ||||||||||||
Sbjct 243 TCCGTAGCGATTAGGAGAGATCGGAGAGAATCTACATTTAACGGTCGTAATGGCGGCGGA 302
Query 300 GGCGGAGCTTTCGCGTCGGTTTCGGTGGTGATTCCGAAGGAAGAGGATGAATTCGCGCCT 359
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 GGCGGAGCGTTCGCATCGGTTTCGGTGGTGATTCCGAAGGAAGAGGATGAATTCGCGCCT 362
Query 360 A-CTACGGCTCAGCTGTTGAAAAAACCGATTGCTTTACTGTCGTTTGTACCGAAAGACGC 418
| || |||| |||||||||||||| || ||||||||||||||| | ||||||||||||||
Sbjct 363 ACCT-CGGCCCAGCTGTTGAAAAACCCCATTGCTTTACTGTCGATAGTACCGAAAGACGC 421
Query 419 CGCACTATTCTTCGCTGGAGCGTTCGCCGGAGCCGCCGCAAAGTCAGTGACGGCACCGCT 478
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 CGCACTATTCTTCGCCGGAGCGTTCGCCGGAGCCGCCGCAAAGTCAGTGACGGCACCGCT 481
Query 479 TGACCGAATAAAGCTCCTAATGCAGACACATGGTGTTCGAGCTGGTCAACAAAGTGCTAA 538
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 482 TGACCGAATAAAGCTCCTAATGCAGACACATGGTGTTCGAGCTGGGCAACAAAGTGCTAA 541
Query 539 GAAGGCTATTGGTTTTATTGAGGCGATTACTCTTATCGGAAAAGAAGAAGGTATCAAAGG 598
||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 542 GAAGGCTATTGGTTTCATTGAGGCCATTACTCTTATCGGAAAGGAAGAAGGTATTAAAGG 601
Query 599 TTATTGGAAAGGAAATCTACCTCAGGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTT 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 602 TTATTGGAAAGGAAATCTACCTCAGGTGATAAGGATTGTACCTTATAGCGCAGTCCAGTT 661
Query 659 GTTTGCATATGAAACATACAAGAAACTCTTTAGGGGAAAAGACGGTCAATTGTCAGTCCT 718
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 662 GTTTGCATATGAAACATACAAGAAACTCTTCAGGGGGAAAGACGGTCAATTGTCAGTCCT 721
Query 719 CGGAAGGCTCGGTGCTGGTGCTTGTGCTGGCATGACGTCTACTCTGATTACATACCCTTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 CGGAAGGCTCGGTGCTGGTGCTTGTGCTGGCATGACGTCTACTCTGATTACATACCCTTT 781
Query 779 AGATGTGCTGAGACTGAGGTTAGCTGTTGAACCAGGTTATCGAACTATGTCCCAGGTTGC 838
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 782 AGATGTGCTGAGATTGAGGTTAGCTGTTGAACCAGGTTATCGAACCATGTCCCAGGTTGC 841
Query 839 CTTGAACATGCTGCGGGAGGAAGGACTTGCATCATTCTATAACGGTCTTGGTCCTTCGCT 898
||||||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 842 CTTGAACATGCTGCGGGAGGAAGGAGTTGCATCATTCTACAACGGTCTAGGTCCTTCGCT 901
Query 899 TTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTGGTAAAGAAATC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TTTAAGTATAGCTCCTTACATTGCCATCAACTTCTGCGTCTTTGATCTGGTAAAGAAATC 961
Query 959 TCTGCCAGAGAAGTATCAACAAAAGACACAATCATCTTTGTTAACAGCAGTAGTAGCTGC 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TCTGCCAGAGAAGTATCAACAAAAGACACAATCATCTTTGTTAACAGCAGTAGTAGCTGC 1021
Query 1019 TGCTATTGCTACTGGTACTTGCTATCCATTGGATACCATTAGAAGACAGATGCAATTGAA 1078
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1022 TGCTATTGCTACCGGTACTTGCTATCCATTGGATACCATTAGAAGGCAGATGCAATTGAA 1081
Query 1079 GGGTACTCCATATAAATCCGTATTAGACGCTTTCTCAGGTATCATTGCGCGTGAAGGAGT 1138
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GGGTACTCCATATAAATCGGTATTAGACGCTTTCTCAGGTATCATTGCGCGTGAAGGAGT 1141
Query 1139 TATTGGATTGTACCGTGGCTTTGTCCCCAATGCACTCAAAAGCATGCCAAACAGCAGTAT 1198
| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 TGTTGGCTTGTACCGTGGCTTTGTCCCCAATGCACTCAAAAGCATGCCAAACAGCAGTAT 1201
Query 1199 TAAGCTTACAACATTCGACATTGTCAAGAAACTCATAGCAGCGAGTGAGAAGGAGTTCCA 1258
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1202 TAAGCTTACAACATTCGACATCGTCAAGAAACTCATAGCAGCGAGTGAGAAGGAGATCCA 1261
Query 1259 AAGAATCGCAGATGACAACCGCAAGAGAGCAAGTCCTAACACAACCGATGAACAAACCTG 1318
||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1262 AAGAATCGCGGATGATAACCGCAAGAAAGCAAGTCCTAACACAATCGATGAACAAACCTG 1321
Query 1319 AAGCCGCGATTTTGAATTTCCAGAAGGTCATTTTTGCCCGTTATCTTATGACCTTT-TCT 1377
||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 1322 AAGACGCAATTTTGGATTTCCACAAGGTCATTTTTGCCCGTTATCTTATGACCTTTGT-T 1380
Query 1378 TGTGTGTTTTGTATTTTGGAATGTAATAAGT-GTCTGTT 1415
||||||||||||| ||||||||||||||||| || ||||
Sbjct 1381 TGTGTGTTTTGTAATTTGGAATGTAATAAGTTGTATGTT 1419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71184372810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5