BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486927
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01490.1 | Symbols: CAX4, ATCAX4 | cation exchanger 4 | chr5... 2237 0.0
> AT5G01490.1 | Symbols: CAX4, ATCAX4 | cation exchanger 4 | chr5:195541-198524
FORWARD LENGTH=1472
Length=1472
Score = 2237 bits (1211), Expect = 0.0
Identities = 1390/1475 (94%), Gaps = 18/1475 (1%)
Strand=Plus/Plus
Query 1 AAAGTTTTGTGGGTTTTGACCAGAGAGAGTCAACGAAGAAGATGTCTTCTATCATTACGG 60
||||||||||||| |||||||| |||||||||||||||||||||||||| |||| |||||
Sbjct 8 AAAGTTTTGTGGGGTTTGACCAAAGAGAGTCAACGAAGAAGATGTCTTCAATCAGTACGG 67
Query 61 AATCGTCTCCGAATCTGTCTCTGCTGGAGAATGGCGGAGGAGGAAGTGATAAGCCGACGG 120
|||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 68 AATCGTCTTCTAATCTGTCTCTGTTAGAGAATGGCGGAGGAGGAAGTGATAAGCCGACGG 127
Query 121 CGGAGATGTCTAGGCGCGTGCGGAGAACGGTATCGACGTCGTCGTTGATAAGGCAGAGAT 180
|||||| ||| ||||| |||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 128 CGGAGACGTCGAGGCGTGTGCGGAGAACGGTATCGGCGTCGTCGTTGATAAGGAAGAGAT 187
Query 181 CGGATCTGAAGCTGAT-TGCGAGAGTACGTTGGGAGTTTCTGAGACGAATCTTGACGAAT 239
|||||||||| ||||| | | ||||| |||||||||||| ||||||||||||||||||||
Sbjct 188 CGGATCTGAAACTGATCT-CCAGAGTTCGTTGGGAGTTTATGAGACGAATCTTGACGAAT 246
Query 240 CTTCAAGAAGTTGTTCTCGGCACCAAATTGTTCATTCTCTTCCCGGCCGTTCCTCTCGCC 299
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 247 CTTCAAGAAGTTCTTCTCGGCACCAAATTGTTCATCCTCTTCCCGGCCGTTCCTCTCGCC 306
Query 300 GTTGTCGCTCACCGCTATGATTGTCCACGTGCGTGGGTCTTTGCGTTGAGCTTGCTGGGA 359
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 307 GTCGTCGCTCACCGCTATGACTGTCCACGTGCGTGGGTCTTTGCGTTGAGCTTGCTGGGA 366
Query 360 TTGACACCTTTGGCCGAACGTATCAGTTTTCTCACTGAGCAAATTGCTTTCCATACCGGT 419
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 367 TTGACACCTTTGGCCGAACGTATCAGTTTTCTCACCGAGCAAATTGCTTTCCATACCGGT 426
Query 420 CCAACAGTTGGGGGATTAATGAACGCGACATGTGGAAACGCGACGGAGATGATAATAGCG 479
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 427 CCAACAGTTGGAGGATTAATGAACGCCACATGTGGAAACGCAACGGAGATGATAATAGCG 486
Query 480 ATTCTAGCGGTTGGACAAAGAAAGATGAGAATAGTGAAActctcacttcttggttctatt 539
|||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 487 ATTCTAGCGGTTGGGCAAAGGAAGATGAGAATAGTGAAACTCTCACTTCTTGGCTCTATT 546
Query 540 ctctccaatcttctcttcgtcttaggtacctctctcttccttGGTGGCATCTCCAATCTC 599
|||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct 547 CTCTCCAATCTTCTCTTCGTCTTAGGCACTTCTCTATTCCTTGGTGGCATCTCTAATCTC 606
Query 600 CGCAAACACCAATCTTTCGACTCAAGACAGGGAGATATGAACTGCATGTTGTTGTATCTG 659
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 607 CGCAAACACCAATCTTTCGACCCAAGACAGGGAGATATGAACAGCATGTTGTTGTATCTG 666
Query 660 GCGCTGTTGTGTCAAACACTACCAATGATAATGAGATTCACAATGGAGGCTGAAGAATAC 719
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCGCTGTTATGTCAGACACTACCAATGATAATGAGATTCACAATGGAGGCTGAAGAATAC 726
Query 720 GATGGATCAGCTGTTGTTATGTTGTCAAGAGCAAGCAGCTTCGTGATGCTCATTGCTTAC 779
||||| |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 727 GATGGGTCAGATGTAGTTGTGTTGTCAAGAGCAAGCAGCTTCGTGATGCTCATTGCTTAC 786
Query 780 TTGGCTttcctcatctttcacctcttctcttctca--tctct-ctcctcctcctcctctt 836
|||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 787 TTGGCTTTTCTCATCTTTCACCTCTTCTCTTCTCATCTCTCTCCTCCTCCTCCTCCTCTT 846
Query 837 actcaGGAAGAAGAGGACGTGTATGACGATGACGTGAGTGACAAGGAAGAAGAAGGAGCC 896
|||| | || ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 847 CCTCA-G-AG-GGAGGACGTGCATGACGATGACGTGAGTGACAAGGAAGAAGAAGGAGCC 903
Query 897 GTAATTGGAATGTGGAGTGCCATTTTTTGGCTTATTATAATGACACTTCTCGTTGCTTTG 956
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 904 GTGATTGGAATGTGGAGTGCGATTTTTTGGCTTATTATAATGACACTTCTCGTTGCTTTG 963
Query 957 CTCTCAGAGTACATTGTCTCCACTATCCAGGACGCAGCAGACTCGTGGGGATTATCAGTG 1016
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CTCTCAGACTACCTTGTCTCCACTATCCAGGACGCAGCAGACTCGTGGGGATTATCAGTG 1023
Query 1017 GGATTCATAGGAATAATATTATTACCAATTGTTGGTAATGCAGCTGAGCACGCTGGTGCT 1076
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1024 GGATTCATAGGAATAATATTATTACCAATTGTTGGTAATGCAGCTGAGCATGCTGGTGCT 1083
Query 1077 GTCATCTTCGCCTTCCGTAACAAACTCGATATAACTCTTGGAATTGCTCTTGGATCTGCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GTCATCTTCGCCTTCCGTAACAAACTCGATATAACTCTTGGAATTGCTCTTGGATCTGCA 1143
Query 1137 ACACAAATTGCTTTGTTCGTGGTACCAGTGACAGTGTTAGTGGCATGGATAATGGGAATA 1196
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1144 ACACAAATTGCTTTGTTCGTGGTACCAGTGACAGTGTTAGTGGCATGGACAATGGGAATA 1203
Query 1197 GACATGGACCTTAACTTCAACCTTCTTGAGACCACTTGTCTTGCCTTGTCCATTATCGTT 1256
|| |||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||
Sbjct 1204 GAAATGGACCTTAACTTCAACCTTCTTGAGACCGCTTGTTTTGCCTTGTCCATTCTTGTT 1263
Query 1257 ACTTCCTTAATACTACATGATGGGACGTCGAACTATATGAAAGGCTTGGTTCTTCTCTTG 1316
||||||||| || |||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1264 ACTTCCTTAGTATTACAGGATGGGACTTCGAACTATATGAAAGGCTTGGTTCTCCTCTTG 1323
Query 1317 TGTTACGTTGTCATTGCGGCATGCTTCTTTGTCTCTAATTCACCCTCAACCGATAC-AGC 1375
||||| |||||||| ||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 1324 TGTTATGTTGTCATAGCGGCCTGCTTCTTTGTCTCTAACTCACCCTCAACCGAAACCAA- 1382
Query 1376 TA-AAGCTAATCATACAATAACGAAAAGGTAACTCGAATATTGTTTAATTTGCCTTTCTT 1434
|| || |||||||||||||||||||||||||||||||||||||||| | | | ||||||
Sbjct 1383 TACAA-CTAATCATACAATAACGAAAAGGTAACTCGAATATTGTTT--TGT-C-TTTCTT 1437
Query 1435 TTAGTGTATTGTTGTTTTCTCTT-ATTACATATTT 1468
|||||||||||||||||||| || |||||||||||
Sbjct 1438 TTAGTGTATTGTTGTTTTCT-TTGATTACATATTT 1471
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5