BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486928
Length=773
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01470.2 | Symbols: | S-adenosyl-L-methionine-dependent met... 1223 0.0
> AT5G01470.2 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:190928-192462 FORWARD
LENGTH=763
Length=763
Score = 1223 bits (662), Expect = 0.0
Identities = 725/756 (96%), Gaps = 2/756 (0%)
Strand=Plus/Plus
Query 1 ACAACTCAACGAGTGACATGGACATAGCCCTCTTCTCGCCGTCGTCACTCTTTGCCGCAG 60
||||||||||||||||||||||||| ||||||||||| ||| |||| |||||||| ||||
Sbjct 9 ACAACTCAACGAGTGACATGGACATCGCCCTCTTCTCACCGGCGTCGCTCTTTGCTGCAG 68
Query 61 ACGGTGACTCCTCCGATGGAGAGACGACGGAGACGAGCCA-AAGCTTCGTTGAGAGAAAT 119
||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 69 ACGGTGACTCCTCTGATGGAGAGACGACGGAGACGAGCCAGAA-CTTCGTTGAGAGAAAT 127
Query 120 CATCAGTTTCCTGGAATTGAATTGCAAATCCGGGAATTTGGTTTCCACCAGCTGAATGCA 179
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 128 CATCAGTTTCCTGGAATTGAACTGCAAATTCGGGAATTTGGTTTCCACCAGCTGAATGCA 187
Query 180 AACTTGCTGTGGCCAGGTTCATTTGCCTTTGCTGATTGGTTAATGCAGCATCGACACTTG 239
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||| | |||
Sbjct 188 AACTTGCTGTGGCCAGGTACATTTGCCTTTGCTGATTGGTTACTGCAGCATCGATATTTG 247
Query 240 ATCCAAAGGCGGCGCTGTCTCGAGATAGGAAGTGGCACAGGGGCACTAGCTATATTTCTT 299
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 248 ATCGAAAGGCGGCGCTGTCTCGAGATAGGAAGTGGCACAGGGGCACTAGCTATATTTCTT 307
Query 300 AAGAAAGAGTTCAATCTCGACATAACTACTTCAGATTACAATGATCAAGAGATTGAAGAC 359
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 AAGAAAGAGTTTAATCTCGACATAACTACTTCAGATTACAATGATCAAGAGATTGAAGAC 367
Query 360 AATATTGTTCATAACTGTATTGCAAACAAGATAATCCCTTCTCTGCCTCATATCAAGCAT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 368 AATATTGTTCATAACTGTATTGCAAACAAGATTATCCCTTCTCTGCCTCATATCAAGCAT 427
Query 420 ACATGGGGCGATGAATTTCCAATCTCGGAACCAGATTGGGATTTGATCATAGCCAGTGAT 479
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 428 ACATGGGGTGATGAATTTCCAATTTCGGAACCAGATTGGGATTTGATCATAGCCAGTGAT 487
Query 480 ATCCTTCTATATGTGAAACAGTACCCAAACTTGATAAAGTCTCTGACTTTTCTTCTCAAA 539
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 488 ATCCTTCTATATGTGAAACAGTACCCAAACTTGATTAAGTCTCTGACTTTTCTTCTCAAA 547
Query 540 ACCTACAAACCAACCAATGTCGTTAGTCCAGCAGAATGCAAGCTAAATGGAGCAGACACA 599
| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 548 AAATACAAACCAACCAATGTCGTTAGTCCAGCAGAAGGTAAGCTAAATGGAGCAGACACA 607
Query 600 GAACTGCCTCGTCCTATGTTCTTAATGAGCTGGAGACGAAGAATTGGGAAAGACGATGAG 659
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 608 GAACTGCCTCGTCCTGTGTTCTTAATGAGCTGGAGACGAAGAATTGGGAAAGACGATGAG 667
Query 660 TCTCTATTCTTTACTGGTTGCGAAGAAGCCGGCCTCGAGGTGAAGCATCTCGGAAACCGA 719
|||||||||||||| || ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 668 TCTCTATTCTTTACGGGCTGCGAAGAAGCTGGCCTGGAGGTGAAGCATCTCGGAAACCGA 727
Query 720 GTTTATTGCATCAAGCTTAGAGAAAGTAACCTCTGA 755
|||||||| ||||||||||||||||| |||||||||
Sbjct 728 GTTTATTGTATCAAGCTTAGAGAAAGCAACCTCTGA 763
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37575141956
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5