BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486932
Length=1924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01450.1 | Symbols: | RING/U-box superfamily protein | chr5... 2739 0.0
> AT5G01450.1 | Symbols: | RING/U-box superfamily protein | chr5:183328-186448
REVERSE LENGTH=1904
Length=1904
Score = 2739 bits (1483), Expect = 0.0
Identities = 1804/1947 (93%), Gaps = 70/1947 (4%)
Strand=Plus/Plus
Query 1 AAATGTTTTACTTTTTCCAAAGTCGtctctctctctctctctcCAAGTTTTGTGAATCCA 60
||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 3 AAATGTTTTACTTTTTCCAAAGTCG------TC-GTCTCTCTCCAAGTTTTGTGAATCCA 55
Query 61 CCGTTCAACGTGACGATGAAG-AA-AG-AGAA---GACCCGTCGTTCAAATCTCTGTCAT 114
||||||||||||||||||||| || || |||| ||||||||||||||| ||||
Sbjct 56 CCGTTCAACGTGACGATGAAGAAAGAGAAGAAGCCGACCCGTCGTTCAAA------TCAT 109
Query 115 CATCGTTCGTTCCTTAACAGCATTAACCCCAAACCTGCGGTTAGGGTTTTACC-TT-T-T 171
| | ||||||||| |||| |||||||||||||||| ||||||||||||||| || | |
Sbjct 110 C--C-TTCGTTCCTCAACAACATTAACCCCAAACCTAAGGTTAGGGTTTTACCTTTATCT 166
Query 172 CTTC-A-------A-TCCTCTCATCGATTCGCGACATCATGTCTCTACCGGATTCTCTCG 222
|||| | | ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 167 CTTCAATTTCTTCATTCCTCTCATCGATTCGCGACAACATGTCTCTACCGGATTCTCTCC 226
Query 223 CGTCTTCTTCTTCTTCTCCGCCTGTGGCCCGTGAAGAAACCGGGTATAATCGCTTTGAAC 282
| |||||||||||||||||||||||| |||||||||||||||| | | ||||||||||||
Sbjct 227 CATCTTCTTCTTCTTCTCCGCCTGTGACCCGTGAAGAAACCGGCTTTCATCGCTTTGAAC 286
Query 283 ATCACGGCCACGATTCCGGTTTTGATCATCGTGATCGTCCACCATGGAATCGTTCTGATT 342
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 287 ATCACGGCAACGATTCCGGTTTTGATCATCGTGATCGTCCACCGTGGAATCGTTCTGAGT 346
Query 343 ACGATTACCGCCATGGAAGCATTGTTGCATCTGAGAACGTGAGGAACAATTCGACTTCGG 402
||||||| |||||||||||| ||||||||||||||||||| ||||||||||| ||||| |
Sbjct 347 ACGATTATCGCCATGGAAGCGTTGTTGCATCTGAGAACGTCAGGAACAATTCCACTTCTG 406
Query 403 AAGACCCTTGGTCTTGCGTTGTCGTCGTTGCTACCTTCTGTATCTTCGTGTCGATGACTT 462
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 407 AAGACCCTTGGTCTTGCGTTGTCGTCGTTGCTACCTTCTGTATCTTTGTGTCGATGACTT 466
Query 463 TGATTCTGGGGCTTTATGGAACAACGAATGTCTGGTTGGGACCAAACTCTTCGTTTCTTA 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 467 TGATTCTGGGGCTTTATGGAACAACGAATGTCTGGTTGGGACCAAACTCTTCGTTTCTTA 526
Query 523 TTAAGCCAACTTCAGTGTTCGTCCAAAATGTCATTGTGGAAGAATTAGGGAACAAGGGAT 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 TTAAGCCAACTTCAGTGTTCGTCCAAAATGTCATTGTGGAAGAATTAGGGAACAAGGGAT 586
Query 583 CTGGTTTGATTCTGTATGGATTGAACCAAGCCCCACAGCTTGATGTTCTGACTAAATGGT 642
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 587 CTGGTTTGATACTGTATGGATTGAACCAAGCCCCACAGCTTGATGTTCTGACTAAATGGT 646
Query 643 CTGAAGTTCACTATCTAGCTGTGCCAAATGATTCTTACAAGTATTGGATACAGTATTTGA 702
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 647 CCGAAGTTCACTATCTAGCTGTGCCTAATGATTCTTACAAGTATTGGATACAGTATTTGA 706
Query 703 ACAAGGGGTCACGCGTAAAAGTTTCATACAACGTTGAATCTGTGGGTTCTTCCCTCTATC 762
||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 707 ACAAGGGGTCACGCGTAAAAGTTTCATACAACGTTGAATCTGTGGGTTCTTCCTTATACC 766
Query 763 TTGTGGTAGCCCAAGGTGTGGATGGGCTCTCTGAGTGGGTACAAGACCCTACCCGTCCAG 822
||||| |||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 767 TTGTGATAGCCCAAGGTGTGGATGGGCTCTCTGAGTGGGTACAAGATCCGACGCGTCCAG 826
Query 823 ACACTACACTGTCATGGCACATAATCTCTGGCAATGGTTACATTGAGCTGGACATAACTA 882
||||||||||||| ||||| |||||||||| | |||||| ||||||| |||||||||||
Sbjct 827 ACACTACACTGTCGTGGCATATAATCTCTGATAGTGGTTATATTGAGCAGGACATAACTA 886
Query 883 AGTCGTCGAGTTATTACGTTGCAGTAGGCAACGCATACCTGAATGAAGTGAAGGCTACGA 942
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 887 AGTCGTCGAGTTATTATGTTGCAGTAGGCAACGTATACCTGAATGAAGTGAAGGCGACGA 946
Query 943 TTGACATTCAAGTTGAGGGGGTATTGTATGATACTACAAATGCTTATTACAATTGCTCTT 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 TTGACATTCAAGTTGAGGGGGTATTGTATGATACTACAAATGCTTATTACAATTGCTCTT 1006
Query 1003 TCCCTAACGACAAGTGCACTCTAAGTGTTCCATTATTTGGAACTAATGCTGCTGTACTAA 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TCCCTAACGACAAGTGCACTCTAAGTGTTCCATTATTTGGAACTAATGCTGCTGTACTAA 1066
Query 1063 CCTCACCAGGTCCAAAGCTGAACAATTCTAAGAATGAGTTCTGCGCAAAACTCTCATATG 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1067 CCTCACCAGGTCCAAAGCTGAACAATTCTAAGAATGAGTTCTGCGCAAAACTCTCATATG 1126
Query 1123 AACCAAGGTGGATTGCATACATAGTTTGCATGGGTGTTGTGACAGCACTCTTGTTAATTG 1182
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1127 AACCAAGGTGGATTGCATACATAGTTTGCATGGGTGTAGTGACAGCACTCTTGTTAATTG 1186
Query 1183 TCTCTAGTCTCTTCAATAAACGACAACCAGTCACTGAAGATGAAACCGTTGATGAAAATG 1242
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1187 TCTCGAGTCTCTTCAATAAACGACAACCAGTCACTGAAGATGAAACCGTTGATGAAAATG 1246
Query 1243 ATGATGTAGCTCCTTTAATTCCGGGAAAAGACGATGATAACTCAAGCTGGTGCTCGTCCT 1302
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 ATGATGTAGCTCCTCTAATTCCGGGAAAAGACGATGATAACTCAAGCTGGTGCTCGTCCT 1306
Query 1303 ACAGTTCTATCTTGACAAGTACTGAGGAATTGGAAGGCGGACATGGTGAAGGCCACAGTA 1362
|||||||||| ||||| ||||| |||||||||||||| | ||||||||||||||||||||
Sbjct 1307 ACAGTTCTATTTTGACGAGTACAGAGGAATTGGAAGGTGCACATGGTGAAGGCCACAGTA 1366
Query 1363 GTACAAGATATCTATGTGCAATTTGCTATGATGCGCCTAGAGACTGTTTCTTCCTCTCTT 1422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1367 GTACAAGATATCTATGTGCAATTTGCTATGATGCGCCTAGAGACTGTTTCTTCCTCTCTT 1426
Query 1423 GTGGACACTGCGTTGCTTGCTTACAGTGCGGGACACGGATAGCTGAAACTTCGGGTTTTT 1482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1427 GTGGACACTGCGTTGCTTGCTTCCAGTGCGGGACACGGATAGCTGAAACTTCGGGTTTTT 1486
Query 1483 GTCCGGTATGCCGTAAGAAGATCAGGAAGGTAAAGAAGATCTTCAATGTCTAACAAAGAG 1542
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1487 GTCCGGTATGCCGTAAGAAGATCAGGAAGGTCAAGAAGATCTTCAATGTCTAACAGAGAG 1546
Query 1543 AATGAATGACACACAGTGCAACGTTGCTTTGCTGTT-CTGTTTCCTCGCATTACCGTATC 1601
||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| ||||
Sbjct 1547 AATGAATAACACACAATGCAACGTTGCTT-GCTGTTTCTGTTTCCTCGCATTACCATATC 1605
Query 1602 TGTTGTATAGATGTAAAAGACAAGTGTGGGATGGAGAAAAGCAAAACAAGGTGATTGCGT 1661
|||||||| ||||||||||||||||||||| |||||||||||| | | ||| | ||||
Sbjct 1606 CGTTGTATAAATGTAAAAGACAAGTGTGGGACGGAGAAAAGCAAGA-A-GGTTCTGGCGT 1663
Query 1662 CTATGTTACTG-T--CTGTATATGAAATGATGTGGGATTCCGGAGTTTCGGCTTGGTTGT 1718
|| |||||||| | |||||||||||||||| ||| ||||||||||||| |||| |||||
Sbjct 1664 CTGTGTTACTGCTGTCTGTATATGAAATGATATGG-ATTCCGGAGTTTCCGCTTCGTTGT 1722
Query 1719 ACTTGTAACCATATTTCATTGAACCCGGTTCATCCGAAATTTTATTATTCCGATACGATA 1778
|||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 1723 ACTTGTAACCATATTTCATTGAACCCGGTT-----GAAATTTTATTTTTCCGATTCGATA 1777
Query 1779 ACTTGTCAGTTTAGCGTTTGGTTTGCAGCGTAATTTCTGGTTTGGGCAACAACATATAAG 1838
||| || || ||||| |||||||||||||||||||| ||||| | ||||||| | |
Sbjct 1778 ACT-GT---TT-AGCGTCTGGTTTGCAGCGTAATTTCTTGTTTGTGTAACAACA-A-A-- 1828
Query 1839 TATGTCTGACCATGTATGTATAGAACTTGCCAATTTTCACGCTGTTGTATTTTTAATCAT 1898
||||||||||||||||| | |||||||| |||||||||| | || | | ||||||
Sbjct 1829 TATGTCTGACCATGTAT--A--GAACTTGCGAATTTTCACG-T-TT-T-T----AATCAT 1876
Query 1899 TTTCTGAAAATTTTC-AATATTCATTC 1924
||||||||| ||||| |||||||||||
Sbjct 1877 TTTCTGAAA-TTTTCCAATATTCATTC 1902
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95280634410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5