BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg486933 Length=855 Score E Sequences producing significant alignments: (Bits) Value AT5G01430.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1225 0.0 AT3G49420.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 968 0.0 > AT5G01430.1 | Symbols: | Got1/Sft2-like vescicle transport protein family | chr5:176447-178623 REVERSE LENGTH=980 Length=980 Score = 1225 bits (663), Expect = 0.0 Identities = 811/876 (93%), Gaps = 35/876 (4%) Strand=Plus/Plus Query 2 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTAATTCTAGATCTC 61 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 118 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTTATTTTAGATCTC 177 Query 62 AAAAGGTAGAAGCAGCTGATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGaaa 121 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 178 AAAAGGTAGAAGCAGCTCATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGAAA 237 Query 122 aaaaTCGGGTTAGGGCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATTGTCTTT 181 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 238 AAAATCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTTT 297 Query 182 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 357 Query 242 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 358 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 417 Query 302 ATATCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 361 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 ATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 477 Query 362 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCAACCTTGGCAGTTTTT 421 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 478 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTTT 537 Query 422 GCTCAGAAGATACCCATTCTCGGTTGGATCATTCAGCAACCATATATTAGATCGTTCTTT 481 ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 538 GCTCAGAAGATACCCGTTCTCGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTTT 597 Query 482 GACAAGTACCGGGGCAAGCGTGTTCCGGTCTAGTCTTCCAGCCCGAGTAGAGAGACGATT 541 ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| Sbjct 598 GACAAGTACCGGGGCAAGCGTGTGCCGGTCTAGTCTTCCATCCCGAGTAGAGAGACGATT 657 Query 542 CACTGAGCTAGATGCAGCTGAACAGACGATTAAAttttttttGGAAGAAGAAGTTGGTGT 601 ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 658 CACTGAGCTAGATGCAGCTGAACAGGCGATTAAAGTTTTT--GGAAGAAGAAGTTGGTGA 715 Query 602 GCTTGTGACTTCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAGCGGAAC 661 || | |||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 716 -CT-----C--CTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAAAAGAAC 767 Query 662 GTACGATTTGAAGCTGTGTGTTCTATGTACTTAAGAGAAAA-CTCAGTGACTT---G-T- 715 |||| |||||||||||||||| |||||||||| |||||||| ||||||||||| | | Sbjct 768 GTACAATTTGAAGCTGTGTGT-CTATGTACTTGAGAGAAAAACTCAGTGACTTAATGCTC 826 Query 716 TT-G-T--A------AA-CGTTTTGGTTTTTTAACTTTGACAAATCGTTTGGCCAAATCT 764 || | | | || |||||||||| ||||||| |||||||||| || ||||||||| Sbjct 827 TTTGATGGAGTTTGTAAACGTTTTGGTTGTTTAACTCTGACAAATCGGTTAGCCAAATCT 886 Query 765 -GATTTTAGCAATACGTCG-CTTTTGGTTTT-GCATACATATAAAA-TTGATTAGCGGTT 820 | |||| ||||||||||| | ||| |||| |||||||||||||| ||||||||||||| Sbjct 887 TG-TTTTGGCAATACGTCGTCGCTTGCTTTTTGCATACATATAAAAATTGATTAGCGGTT 945 Query 821 CCGGTTTAATGTGTAATATTAA-TGGGGTTCGGTTT 855 ||||||||||||||||| | || || |||||||||| Sbjct 946 CCGGTTTAATGTGTAAT-TCAAATGTGGTTCGGTTT 980 > AT3G49420.1 | Symbols: | Got1/Sft2-like vescicle transport protein family | chr3:18329387-18331431 FORWARD LENGTH=924 Length=924 Score = 968 bits (524), Expect = 0.0 Identities = 596/629 (95%), Gaps = 11/629 (2%) Strand=Plus/Plus Query 61 CAAAAGGTAGAAGCAGCTGATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGaa 120 ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 110 CAAAAGGTAGAAGTAGCTGATTACAGGAACAATGATGTCCTTTGAAATGAATGACCGGAA 169 Query 121 aaaaaTCGGGTTAGGGCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATTGTCTT 180 ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 170 AAAAATCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTT 229 Query 181 TGTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCT 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 230 CGTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCT 289 Query 241 AACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAAC 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 AACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAAC 349 Query 301 CATATCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGAT 360 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 CATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGAT 409 Query 361 GTTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCAACCTTGGCAGTTTT 420 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 410 GTTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTT 469 Query 421 TGCTCAGAAGATACCCATTCTCGGTTGGATCATTCAGCAACCATATATTAGATCGTTCTT 480 |||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| Sbjct 470 TGCTCAGAAGATACCCGTTCTGGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTT 529 Query 481 TGACAAGTACCGGGGCAAGCGTGTTCCGGTCTAGTCTTCCAGCCCGAGTAGAGAGACGAT 540 ||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||| Sbjct 530 TGACAAGTACCGGGGCAAGCGAGTGCCGGTCTAGTCTTCCATCCCGAGCAGAGAGACGAT 589 Query 541 TCACTGAGCTAGATGCAGCTGAACAGACGATTAAAttttttttGGAAGAAGAAGTTGGTG 600 |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| | Sbjct 590 TCACTGAGCTAGATGCAGCTGAACAGGCGATTAAAGTTTTT--GGAAGAAGAAGTT--T- 644 Query 601 TGCTTGTGACTTCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAGCGGAA 660 | |||| | |||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 645 --C--GTGA-TCCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAAAAGAA 699 Query 661 CGTACGATTTGAAGCTGTGTGTTCTATGT 689 ||||| |||||||||||||||| |||||| Sbjct 700 CGTACAATTTGAAGCTGTGTGT-CTATGT 727 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41694342010 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5