BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486933
Length=855
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01430.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 1225 0.0
AT3G49420.1 | Symbols: | Got1/Sft2-like vescicle transport pro... 968 0.0
> AT5G01430.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr5:176447-178623 REVERSE LENGTH=980
Length=980
Score = 1225 bits (663), Expect = 0.0
Identities = 811/876 (93%), Gaps = 35/876 (4%)
Strand=Plus/Plus
Query 2 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTAATTCTAGATCTC 61
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 118 CTTCGAGGAGCCTGCGTGCTAGGGTTTCTCCGCCTTCTTCCTTCCCTTATTTTAGATCTC 177
Query 62 AAAAGGTAGAAGCAGCTGATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGaaa 121
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 AAAAGGTAGAAGCAGCTCATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGAAA 237
Query 122 aaaaTCGGGTTAGGGCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATTGTCTTT 181
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 238 AAAATCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTTT 297
Query 182 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 GTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCTA 357
Query 242 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 ACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAACC 417
Query 302 ATATCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 361
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGATG 477
Query 362 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCAACCTTGGCAGTTTTT 421
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 478 TTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTTT 537
Query 422 GCTCAGAAGATACCCATTCTCGGTTGGATCATTCAGCAACCATATATTAGATCGTTCTTT 481
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 GCTCAGAAGATACCCGTTCTCGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTTT 597
Query 482 GACAAGTACCGGGGCAAGCGTGTTCCGGTCTAGTCTTCCAGCCCGAGTAGAGAGACGATT 541
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 598 GACAAGTACCGGGGCAAGCGTGTGCCGGTCTAGTCTTCCATCCCGAGTAGAGAGACGATT 657
Query 542 CACTGAGCTAGATGCAGCTGAACAGACGATTAAAttttttttGGAAGAAGAAGTTGGTGT 601
||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 658 CACTGAGCTAGATGCAGCTGAACAGGCGATTAAAGTTTTT--GGAAGAAGAAGTTGGTGA 715
Query 602 GCTTGTGACTTCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAGCGGAAC 661
|| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 716 -CT-----C--CTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAAAAGAAC 767
Query 662 GTACGATTTGAAGCTGTGTGTTCTATGTACTTAAGAGAAAA-CTCAGTGACTT---G-T- 715
|||| |||||||||||||||| |||||||||| |||||||| ||||||||||| | |
Sbjct 768 GTACAATTTGAAGCTGTGTGT-CTATGTACTTGAGAGAAAAACTCAGTGACTTAATGCTC 826
Query 716 TT-G-T--A------AA-CGTTTTGGTTTTTTAACTTTGACAAATCGTTTGGCCAAATCT 764
|| | | | || |||||||||| ||||||| |||||||||| || |||||||||
Sbjct 827 TTTGATGGAGTTTGTAAACGTTTTGGTTGTTTAACTCTGACAAATCGGTTAGCCAAATCT 886
Query 765 -GATTTTAGCAATACGTCG-CTTTTGGTTTT-GCATACATATAAAA-TTGATTAGCGGTT 820
| |||| ||||||||||| | ||| |||| |||||||||||||| |||||||||||||
Sbjct 887 TG-TTTTGGCAATACGTCGTCGCTTGCTTTTTGCATACATATAAAAATTGATTAGCGGTT 945
Query 821 CCGGTTTAATGTGTAATATTAA-TGGGGTTCGGTTT 855
||||||||||||||||| | || || ||||||||||
Sbjct 946 CCGGTTTAATGTGTAAT-TCAAATGTGGTTCGGTTT 980
> AT3G49420.1 | Symbols: | Got1/Sft2-like vescicle transport protein
family | chr3:18329387-18331431 FORWARD LENGTH=924
Length=924
Score = 968 bits (524), Expect = 0.0
Identities = 596/629 (95%), Gaps = 11/629 (2%)
Strand=Plus/Plus
Query 61 CAAAAGGTAGAAGCAGCTGATTACAGGAACCATGATGTCCTTTGAAATGAATGACCGGaa 120
||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 110 CAAAAGGTAGAAGTAGCTGATTACAGGAACAATGATGTCCTTTGAAATGAATGACCGGAA 169
Query 121 aaaaaTCGGGTTAGGGCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATTGTCTT 180
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 170 AAAAATCGGGTTAGGCCTGACAGGATTTGGCGTATTCTTCTCGTTTTTGGGAATAGTCTT 229
Query 181 TGTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCT 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 CGTCTTTGATAAGGGATTACTTGCCATGGGAAATATTCTTTTCATCTCGGGGGTTAGTCT 289
Query 241 AACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAAC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 AACCATTGGCTTCAAGTCTACCATGCAGTTCTTCATGAAGCGTCAAAATTATAAGGGAAC 349
Query 301 CATATCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGAT 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 CATCTCTTTTGGCGTCGGTTTCTTCTTTGTTATCATCGGGTGGCCTATCTTGGGAATGAT 409
Query 361 GTTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCAACCTTGGCAGTTTT 420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 410 GTTGGAGACCTATGGCTTTTTCGTACTCTTCAGTGGCTTCTGGCCTACCTTGGCAGTCTT 469
Query 421 TGCTCAGAAGATACCCATTCTCGGTTGGATCATTCAGCAACCATATATTAGATCGTTCTT 480
|||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||
Sbjct 470 TGCTCAGAAGATACCCGTTCTGGGTTGGATTATTCAGCAACCATATATTAGATCGTTCTT 529
Query 481 TGACAAGTACCGGGGCAAGCGTGTTCCGGTCTAGTCTTCCAGCCCGAGTAGAGAGACGAT 540
||||||||||||||||||||| || |||||||||||||||| |||||| |||||||||||
Sbjct 530 TGACAAGTACCGGGGCAAGCGAGTGCCGGTCTAGTCTTCCATCCCGAGCAGAGAGACGAT 589
Query 541 TCACTGAGCTAGATGCAGCTGAACAGACGATTAAAttttttttGGAAGAAGAAGTTGGTG 600
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| |
Sbjct 590 TCACTGAGCTAGATGCAGCTGAACAGGCGATTAAAGTTTTT--GGAAGAAGAAGTT--T- 644
Query 601 TGCTTGTGACTTCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAGCGGAA 660
| |||| | |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 645 --C--GTGA-TCCTGTAGAAAACTAAAACCATAGGAGAAAGAAAATAGGAAGGAAAAGAA 699
Query 661 CGTACGATTTGAAGCTGTGTGTTCTATGT 689
||||| |||||||||||||||| ||||||
Sbjct 700 CGTACAATTTGAAGCTGTGTGT-CTATGT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41694342010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5