BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486934
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01420.1 | Symbols: | Glutaredoxin family protein | chr5:17... 1877 0.0
> AT5G01420.1 | Symbols: | Glutaredoxin family protein | chr5:174799-176214
REVERSE LENGTH=1416
Length=1416
Score = 1877 bits (1016), Expect = 0.0
Identities = 1282/1405 (91%), Gaps = 39/1405 (3%)
Strand=Plus/Plus
Query 1 CTTTTACCCTAATTTATCATCTTATCCCCAACGAACTTTTCTCGATTTCGATTTGATTGG 60
|||||||||||||||||| ||||||||||| |||| |||||||||||| ||| |||||||
Sbjct 29 CTTTTACCCTAATTTATCTTCTTATCCCCAGCGAAGTTTTCTCGATTTTGATCTGATTGG 88
Query 61 TAGTTTGGTACTGATCTCCGGTGAAGTAAAACACTGGAAGGAGATGAAGTCATCGAGAAT 120
|| || ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 89 TA------TA--GATCTCCGGTGAAGTAATACACTGGAGGGAGATGAAGTCATCGAGAAT 140
Query 121 GAAGTTTGCAAAGAAATTGAAATCGATTAGAGCCGGCGAATATCTGAATCAGGATCGGAT 180
||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 141 GAAGTTTGCAAAGAAGTTGAAATCAATTAGAGCCGGAGAATATCTGAATCAGGATCGAAT 200
Query 181 TCTCCAAGTTCTTTCTGCTGCAGATGGGATCTCTGAGTTTTTTCCAAAGATATCTAACCC 240
|||||| |||||||||||||| | || ||||||| ||||||||||||||||||
Sbjct 201 TCTCCAGGTTCTTTCTGCTGC--A---GA----TGAGTTTCTTCCAAAGATATCTAACCA 251
Query 241 CATTCCTCAGA-TA-A-CAGCCGCTTCTATCTGGAGAGTCCCTCAAAAGCT-TGATGATC 296
||||||||||| || | | |||||||||||||||||| |||||||||| | ||| |||
Sbjct 252 CATTCCTCAGATTACATCCGCCGCTTCTATCTGGAGAACCCCTCAAAAG-TCTGAAAATC 310
Query 297 AAATTGCAAATGTAACGGAACTTGTGGAAAACGAGAAAGGAGGAGGAGAAGAAGCTTCTT 356
||||||||||||||||||||||| ||||||||| || | ||||| |||||||| |||
Sbjct 311 AAATTGCAAATGTAACGGAACTTTTGGAAAACGTGAGACAAGGAGAAGAAGAAG---CTT 367
Query 357 CTGGAAATGTCGTTGGCAACGAAGAGAACGTACGGCCTCCGGTGAACCAGATTCCGAGAG 416
|||||||| | || ||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 368 CTGGAAATTTTGTCGGCGACGAGGAGAACGTACGGCCTCCGGTGAATCAGATTCCGAGAG 427
Query 417 TTCCGTGTGATCGGAAAGAGAGTAAACCGGCAGTTTCGTGCGGATCTGATACAGGTAA-C 475
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |
Sbjct 428 TTCCGTGTGATCGGAAAGAGAGTAAACTGGCAGTTTCATGCGGATCTGATACAGG-AATC 486
Query 476 GGAAGGAAGAGTTTCGGATCTGGATTTAGAAGACCTGATTTGAATTCAACCACACTTTTC 535
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 487 GGAAGAAAGAGTTTCGGATCTGGATTTAGAAGACCTGATTTGAATTCGACCACACTTTTC 546
Query 536 GATCCGAAGCTGTTAGAAGCATTTGAATTAGCTGCGTTATGCTTTAGGAAGATTGACGAT 595
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 547 GATCCGAAACTGTTAGAAGCATTTGAATTAGCTGCGTTATGCTTTAGGAAGATTAAGGAT 606
Query 596 TTCTCCAGAGAAGCCAGAGTCAATGATGAAGACGACATCGTCTTTCCCGAGGAAGAGGAA 655
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TTTTCCAGAGAAGCCAGAGTCAATGATGAAGACGACATCGTCTTTCCCGAGGAAGAGGAA 666
Query 656 ATCGGAAAAGACGAGAATACCCTTCCCCCGGTGATTGGCCTCGAAGAAGAGGATAGACGG 715
||| ||||||||| ||||| | |||| ||||||||| || || | |||| ||||||||
Sbjct 667 ATCAGAAAAGACGGGAATAGCATTCCTCCGGTGATTAGCGTC---GTAGAGTATAGACGG 723
Query 716 AAAGATGAAAACGTCTTCGTCCTTCACAAAGATGATGGAAATGTCCTTCAGATAGCAAAC 775
||||| ||||| ||| |||| |||||||||||||||||||||| ||||||||| | |||
Sbjct 724 AAAGACGAAAATGTCGTCGTTCTTCACAAAGATGATGGAAATGCCCTTCAGATTGTAAAT 783
Query 776 GCCA-CCGCGGAAGAAGTCATCGGAGAAGAAGACAATGGAGAAGACGGAAGTACCCTTAT 834
|| | | | |||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 784 GCGATCAG-GGAAGAAGTCATCGGAGAAGAAGACATTGGAAAAGACGGAAATACCCTTAT 842
Query 835 CGATCCGTTGTTGGAATTCGAGGAACGGTGTCCTCCGGGAGGAGAGGAATCCGTTGTTTT 894
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GGATCCGTTGTTGGAATTCGAGGAACGGTGTCCTCCGGGAGGAGAGGAATCCGTTGTTTT 902
Query 895 CTACACAACGACTCTTCGGGGAATCAGAAAAACGTTCGACGACTGCAACATGATCCGATT 954
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 903 CTACACAACGACTCTTCGAGGAATCAGAAAAACGTTCGACGATTGCAACATGATCCGATT 962
Query 955 TCTGCTGGATAGTTTTAAGGTTAAGTACTACGAGAGAGATGTGTCGATGCATAGAGAGTA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TCTGCTGGATAGTTTTAAGGTTAAGTACTACGAGAGAGATGTGTCGATGCATAGAGAGTA 1022
Query 1015 TAGAGAAGAGCTCCGACGAATCTCAGCGGCGGAAACGGATGTTTTGCCTCCGGTTCTGTT 1074
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 1023 TAGAGAAGAGCTCCGACGAATCTCAGCGGCGGAAACAGAGGTGTTGCCTCCGGTTCTGTT 1082
Query 1075 CATAAAAGGAAGGTGTATCGGTGGAGCTCAGAGAGTGTTGGGTCTGCACGAGCAAGGGAA 1134
| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1083 CGTAAAAGGAAGGTGTATCGGTGGAGCTCAGAGAGTGTTGGGACTGCACGAGCAAGGGAA 1142
Query 1135 GTTTA-GAGTTCTGTTTGACGGCGTTCCAATCACCGGAGATGAACGTTGCCGGCGATGCG 1193
||||| || |||| ||||| ||| ||||||||||||||||||||||||||||||| ||||
Sbjct 1143 GTTTAAGA-TTCTCTTTGAGGGCATTCCAATCACCGGAGATGAACGTTGCCGGCGGTGCG 1201
Query 1194 ATGGGTTTAGGTTTTTGATGTGTGATGGATGCAGAGGTAGTCGCCGGATTATCTCCGGTG 1253
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1202 ATGGTTTTAGGTTTTTGATGTGTGATGGATGCAGAGGTAGTCGCCGGATTATCTCTGGTG 1261
Query 1254 ATGGATCAAGGATTCAGTGTTTGATATGTAATGAGAATGGGTTAATTGTGTGCGTTGATT 1313
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1262 ATGGATCAAGAATTCAGTGTTTGATATGTAATGAGAATGGGTTAATTGTGTGCGTTGGTT 1321
Query 1314 GCTCCTAAGATCATTTTTTATGTGTG-T--ATATAT--CAAATTACACTATTCGTTTATT 1368
|||||||| | |||||||| ||| || | |||||| ||||||||| ||||||||||||
Sbjct 1322 GCTCCTAATACCATTTTTTTTGTTTGGTCTATATATATCAAATTACATTATTCGTTTATT 1381
Query 1369 ATTTTTCTTAGTGCTGTAACGATTT 1393
|||||||||||| |||||||||||
Sbjct 1382 ATTTTTCTTAGTATTGTAACGATTT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5