BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg486937
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01390.1 | Symbols: | DNAJ heat shock family protein | chr5... 1940 0.0
AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3... 287 2e-76
AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4... 213 3e-54
> AT5G01390.1 | Symbols: | DNAJ heat shock family protein | chr5:160264-162299
REVERSE LENGTH=1344
Length=1344
Score = 1940 bits (1050), Expect = 0.0
Identities = 1176/1233 (95%), Gaps = 24/1233 (2%)
Strand=Plus/Plus
Query 1 AACAAGTCG-A-AGAG-AGTCGTCGACCCCTAAATAAAATAAAATCCAGTGAAGAAGAAG 57
||||||||| | |||| |||| |||||||| | |||||||||||||||||||||||
Sbjct 14 AACAAGTCGAAGAGAGTAGTCATCGACCCC----T--AATAAAATCCAGTGAAGAAGAAG 67
Query 58 A-AGATTGAGTgagagagagagaTA-AAATCCAGATGGGGGTTGATTTCTATAAGGTTCT 115
| || ||||||||||||||||| | | | ||||||||||||||||||||||||||||
Sbjct 68 ATTGAGTGAGTGAGAGAGAGAGAGAGAGA-GAAGATGGGGGTTGATTTCTATAAGGTTCT 126
Query 116 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 TGAAGTTGATCGAAGTGCTAATGACGACGAGCTTAAGAAAGCTTATCGCAAACTCGCCAT 186
Query 176 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAACAAGCCGAAGCTAAATTCAAGCA 235
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 187 GAAATGGCATCCTGATAAGAACCCTAACAACAAAAAAGAAGCCGAAGCTAAATTCAAGCA 246
Query 236 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 GATCTCTGAAGCTTACGATGTTTTGAGTGATCCTCAGAAACGAGCAATCTACGAGCAATA 306
Query 296 CGGAGAAGAAGGTTTAAACCAAGCGGCCCCACCTCCTGGCGCCGGTGGT---TACCCTGG 352
|||||||||||||||||||||| ||||||||||| |||||||||||| || |||||
Sbjct 307 CGGAGAAGAAGGTTTAAACCAA---GCCCCACCTCCCGGCGCCGGTGGTGGCTATCCTGG 363
Query 353 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGACATCTTCTC 412
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 364 AGGATCAGACGCCGGAGCTTCTTTCCGGTTCAATCCCAGAAGCGCTGATGATATCTTCTC 423
Query 413 CGAGTTCTTTGGTTTCACAAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCTGGACC 472
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 424 CGAGTTCTTTGGTTTCACGAGGCCTTCTTTTGGTACGGGAAGCGACTCACGCGCAGGACC 483
Query 473 TTCT---TTTAGGTATGGCGATGACATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 529
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 484 TTCTGGCTTTAGGTATGGCGATGATATCTTCGCTTCCTTCAGGGCTGCTACTACCGGAGG 543
Query 530 AGAAGCCTCCATTCCTGCAAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 589
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 544 AGAAGCCTCCATTCCTTCTAGGAAATCTGCTCCTATTGAGAGACAATTGCCTTGTAGCTT 603
Query 590 GGAGGATTTGTATAAAGGAGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 649
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 604 GGAGGATTTGTATAAAGGTGTCTCCAAGAAGATGAAGATCTCTCGTGATGTTCTTGACTC 663
Query 650 TACCGGGAGGCCAACACCGGTTGAGGAGATTTTGACGATAGAAATCAAACCCGGTTGGAA 709
| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 664 TTCCGGGAGGCCAACACCGGTTGAGGAGATCTTGACGATAGAAATTAAACCCGGTTGGAA 723
Query 710 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAACGAGCATCGTGGGGTCATTCCATC 769
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 724 AAAAGGAACAAAGATAACCTTCCTGGAAAAAGGTAATGAGCATCGTGGAGTCATACCATC 783
Query 770 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 CGATCTCGTTTTCATCGTAGACGAGAAACCGCATCCCGTTTTCAAACGAGACGGGAATGA 843
Query 830 TCTTGTGGTGATGCAAAAGATATCTCTAGTGGAAGCTCTCACAGGTTACACCGCACAGGT 889
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 844 TCTTGTGGTAATGCAAAAGATTTCTCTAGTGGATGCTCTCACAGGTTACACCGCACAGGT 903
Query 890 CACTACTCTTGACGGAAGAACCCTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 949
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 904 CACTACTCTTGACGGAAGAACCTTAACAGTTCCGGTAAACAATGTGATCAGTCCGTCGTA 963
Query 950 CGAAGAGGTGGTGAAAGGCGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1009
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 964 CGAAGAGGTGGTGAAAGGAGAAGGCATGCCGATCCCTAAAGATCCGTCAAGAAAAGGAAA 1023
Query 1010 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 CTTGAGAATCAGATTCATCATCAAGTTCCCTTCGAAGCTAACCACTGAGCAGAAATCAGG 1083
Query 1070 GATCAAGCGGATGTTATCACCTTGAATGTCCAA-GATTGAAGCATCTCGTTTCAGTTTTT 1128
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1084 GATCAAGCGGATGTTATCACCTTGAATGTCCAAAGATTGAAGCATCTCGTTTCAGTTTTT 1143
Query 1129 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCCTAAGGgtttttta 1188
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1144 TCAATCTGCTAGCTTTTTTGGAATCTTTTAGAAGCAGAATATGTGCTTATGGTTTTTTTA 1203
Query 1189 -tttattttttgttgcattttggtaaagttttt 1220
|||||||| ||||||||||||||| ||||||
Sbjct 1204 ATTTATTTTG-GTTGCATTTTGGTAAGGTTTTT 1235
> AT3G08910.1 | Symbols: | DNAJ heat shock family protein | chr3:2710154-2711895
REVERSE LENGTH=1304
Length=1304
Score = 287 bits (155), Expect = 2e-76
Identities = 289/351 (82%), Gaps = 20/351 (6%)
Strand=Plus/Plus
Query 90 ATGGGGGTTGATT-TCTATAAGGTTCTTGAAGTTGATC-GAAGTGCTAATGACGACGAGC 147
|||||||| |||| | || ||||||||| | || |||| ||| ||| || |||||||| |
Sbjct 85 ATGGGGGTCGATTAT-TACAAGGTTCTTCAGGTGGATCGGAA-TGCGAAAGACGACGA-C 141
Query 148 TT-AAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACAAC 206
|| ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 142 TTGAAGAAAGCTTATCGCAAACTCGCCATGAAGTGGCATCCAGACAAGAACCCTAACAAC 201
Query 207 AAAAAACAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTTTTGAGTGAT 266
|||||| | |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 202 AAAAAAGACGCCGAAGCCAAATTCAAGCAGATCTCCGAAGCTTACGATGTTTTGAGTGAT 261
Query 267 CCTCAGAA-ACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAACCAAGC--GGCC 323
||||| || | |||| ||||| || ||||| |||||||||||| ||| | |||| |||
Sbjct 262 CCTCAAAAGA-GAGCCATCTATGATCAATATGGAGAAGAAGGTCTAA-C-AAGCCAGGCT 318
Query 324 CCACCTCCTGGCGCCGGTGGTTACCCTGGAGGATCAGACGCCGGAGCTTCTTTCCGGTTC 383
|| ||||| || || || || | |||| || | || ||||| |||||||||
Sbjct 319 CCGCCTCCCGGAGCAGGCGGCGGGTTTTC-GGATG-GA-G--GG-GCTTCGTTCCGGTTC 372
Query 384 AATCCC-AGAAGCGCTGATGACATCTTCTCCGAGTTCTTTGGTTTCACAAG 433
|| | |||||||| ||||| |||||||| ||||||||||| ||||||||
Sbjct 373 AA-CGGTAGAAGCGCAGATGATATCTTCTCGGAGTTCTTTGGCTTCACAAG 422
> AT4G28480.1 | Symbols: | DNAJ heat shock family protein | chr4:14073042-14075271
FORWARD LENGTH=1495
Length=1495
Score = 213 bits (115), Expect = 3e-54
Identities = 194/231 (84%), Gaps = 10/231 (4%)
Strand=Plus/Plus
Query 88 AGATGGGGGTTGATT-TCTATAAGGTTCTTGA-A-GTTGATCGAAGTGCTAATGACGACG 144
||||||| ||||||| | || |||||| || | | |||||| |||| ||||| ||||| |
Sbjct 267 AGATGGGAGTTGATTAT-TACAAGGTT-TT-ACAGGTTGATAGAAGCGCTAACGACGATG 323
Query 145 AGCTTAAGAAAGCTTATCGCAAACTCGCCATGAAATGGCATCCTGATAAGAACCCTAACA 204
| ||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||
Sbjct 324 ACCTTAAGAAAGCTTATAGAAAACTCGCTATGAAATGGCATCCTGATAAGAACCCTAACA 383
Query 205 ACAAAAAACAAGCCGAAGCTAAATTCAAGCAGATCTCTGAAGCTTACGATGTT-TTGAGT 263
|||||||| | || || ||||| ||||||||||||||||| || ||||||||| || ||
Sbjct 384 ACAAAAAAGACGCTGAGGCTAAGTTCAAGCAGATCTCTGAGGCCTACGATGTTCTT-AGC 442
Query 264 GATCCTCAGAA-ACGAGCAATCTACGAGCAATACGGAGAAGAAGGTTTAAA 313
|||||||| || | |||| | || || |||||||| || ||||| |||||
Sbjct 443 GATCCTCAAAAGA-GAGCTGTATATGATCAATACGGTGAGGAAGGGTTAAA 492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61696469805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5